Factsheet for VIT_00s0211g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00080.t01	Wine grape	cytosol	35.0	50.0
VIT_00s0211g00070.t01	Wine grape	mitochondrion	96.92	48.65
VIT_00s0211g00120.t01	Wine grape	mitochondrion	95.0	47.68
VIT_18s0001g07960.t01	Wine grape	mitochondrion	86.54	43.6
OQU91027	Sorghum	mitochondrion	83.46	42.3
TraesCS4A01G246100.1	Wheat	mitochondrion	81.54	41.57
TraesCS4B01G069300.1	Wheat	mitochondrion	81.54	41.57
TraesCS4D01G068100.1	Wheat	mitochondrion	81.54	41.57
Os03t0738400-01	Rice	mitochondrion	81.92	41.52
HORVU4Hr1G011500.1	Barley	plasma membrane	81.92	39.96
VIT_05s0029g00310.t01	Wine grape	cytosol	53.46	29.51
VIT_04s0008g00770.t01	Wine grape	plastid	51.54	25.38
VIT_12s0034g02380.t01	Wine grape	cytosol	46.92	21.14
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	45.0	20.03
VIT_00s0211g00100.t01	Wine grape	mitochondrion	0.77	0.81
VIT_00s0211g00160.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0211g00090	EMBL:FN595522	EnsemblPlants:VIT_00s0211g00090.t01	EnsemblPlantsGene:VIT_00s0211g00090	Gene3D:3.40.640.10	Gene3D:3.90.1150.10
GO:GO:0003674	GO:GO:0003824	InterPro:IPR015421	InterPro:IPR015422	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	PFAM:PF00464	ProteinID:CBI25701	ProteinID:CBI25701.3
SUPFAM:SSF53383	UniParc:UPI0001BE2C50	UniProt:D7T5B8	MapMan:50.2.1	:	:

Description

No Description!

Coordinates

chrUn:-:12914098..12921200

Molecular Weight (calculated)

28601.6 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.203

Length

260 amino acids

Sequence
(BLAST)

001: MAHISGLVAA GVIPSPFEYA DIVTTTTYKS LRGPHGAMIF FKKGVKEVNK QGKEVLYDYE DKINQAVFPG LQSAPHNHTI AGLAVALKQA TTPEYKAYQE
101: QVLSNCSKFA ETLMKKGYEL VSGGTENHLV LVNLKNKGID GSRVEKVLES VHIVANKNTV PGDVSAMVPS GIRMGTPALT SRGFVEEDFV KVAEYFDVAV
201: TVAVKIKAET TGTKLKDFLA IMQSSPHLQY EIAKLRHEVE KYAKQFPTIG FEKETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.