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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:mitochondrion
TargetP:plastid
YLoc:mitochondrion
 plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G069620.20
HORVU7Hr1G064340.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G37930.1 HORVU5Hr1G069620.20 AT4G24560.1 23232097
AT4G37930.1 HORVU7Hr1G064340.3 AT4G24560.1 23232097
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G068100.1 Wheat mitochondrion 95.5 99.8
TraesCS4B01G069300.1 Wheat mitochondrion 95.5 99.8
TraesCS4A01G246100.1 Wheat mitochondrion 95.5 99.8
Os03t0738400-01 Rice mitochondrion 89.49 92.98
OQU91027 Sorghum mitochondrion 87.99 91.42
CDX90395 Canola cytosol 57.97 88.29
CDX69344 Canola mitochondrion 84.24 86.85
CDX75685 Canola mitochondrion 84.05 86.65
Bra011796.1-P Field mustard mitochondrion 83.86 86.46
AT4G37930.1 Thale cress mitochondrion 83.68 86.27
CDY49684 Canola mitochondrion 83.49 86.07
Bra010622.1-P Field mustard mitochondrion 83.11 85.69
PGSC0003DMT400078666 Potato mitochondrion 83.11 85.52
Solyc02g091560.2.1 Tomato plastid 82.93 85.33
KRG99502 Soybean mitochondrion 82.74 85.14
GSMUA_Achr7P27360_001 Banana mitochondrion 81.8 84.82
PGSC0003DMT400016362 Potato mitochondrion 82.55 84.78
KRH45493 Soybean mitochondrion 82.18 84.56
VIT_18s0001g07960.t01 Wine grape mitochondrion 81.61 84.3
Solyc04g076790.2.1 Tomato nucleus 81.61 84.14
VIT_00s0211g00120.t01 Wine grape mitochondrion 81.61 83.98
GSMUA_Achr6P23140_001 Banana mitochondrion 81.61 83.65
KRH16896 Soybean mitochondrion 78.61 82.64
KRH72501 Soybean mitochondrion 79.55 82.49
VIT_00s0211g00090.t01 Wine grape cytosol 39.96 81.92
VIT_00s0211g00070.t01 Wine grape mitochondrion 78.99 81.27
GSMUA_Achr3P30760_001 Banana mitochondrion 79.36 80.73
KRH39500 Soybean mitochondrion 77.11 79.5
VIT_00s0211g00100.t01 Wine grape mitochondrion 36.4 78.23
HORVU1Hr1G055860.2 Barley plasma membrane 52.16 59.02
HORVU2Hr1G110110.2 Barley mitochondrion, plastid 51.22 49.55
Zm00001d009738_P001 Maize cytosol, plastid 19.89 48.85
HORVU3Hr1G082070.2 Barley cytosol 47.47 43.1
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10UniProt:A0A287N7L4GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004372GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005840
GO:GO:0005886GO:GO:0006544GO:GO:0006563GO:GO:0006730GO:GO:0006950GO:GO:0007623
GO:GO:0008150GO:GO:0008152GO:GO:0008266GO:GO:0009058GO:GO:0009409GO:GO:0009416
GO:GO:0009507GO:GO:0009534GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628
GO:GO:0009853GO:GO:0009987GO:GO:0010319GO:GO:0016020GO:GO:0016740GO:GO:0019264
GO:GO:0022626GO:GO:0030170GO:GO:0035999GO:GO:0046686GO:GO:0048046EnsemblPlantsGene:HORVU4Hr1G011500
EnsemblPlants:HORVU4Hr1G011500.1InterPro:IPR015421InterPro:IPR015422HAMAP:MF_00051PFAM:PF00464PIRSF:PIRSF000412
ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF12InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI000B486BBCSEG:seg:
Description
Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A287N7L4]
Coordinates
chrchr4H:-:35785279..35791676
Molecular Weight (calculated)
58581.3 Da
IEP (calculated)
8.940
GRAVY (calculated)
-0.313
Length
533 amino acids
Sequence
(BLAST)
001: HYLPNPTLQP LPRGGGRPPP PPTMAMATAL RKLSARGQPL SRLTPLYSMA SLPATEERSA VTWPKQLNAP LEEVDPEIAD IIELEKARQW KGLELIPSEN
101: FTSLSVMQAV GSVMTNKYSE GYPGARYYGG NEYIDMAETL CQKRALEAFN LDPEKWGVNV QPLSGSPANF HVYTALLKPH DRIMALDLPH GGHLSHGYQT
201: DTKKISAVSI FFETMPYRLD ESTGLIDYDQ LEKSAVLFRP KLIVAGASAY ARLYDYNRMR KICDKQKAVL LADMAHISGL VAAGVIPSPF EYADVVTTTT
301: HKSLRGPRGA MIFFRKGVKE INKQGKEVKY DFEDKINAAV FPGLQGGPHN HTITGLAVAL KQATTQEYRA YQEQVMSNSA RFAESLTSKG YDIVSGGTDN
401: HLVLVNLKKK GIDGSRVEKV LENVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVAEFFD SAVNLALKVK AAAAGTKLKD FVATLQSDSN
501: IQAEIAKLRH DVEEYAKQFP TIGFEKETMK YKN
Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.