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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plastid
MultiLoc:cytosol
WoLF PSORT:plastid
YLoc:cytosol
plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G220400.1 Wheat golgi 98.73 87.24
TraesCS1A01G218700.1 Wheat golgi 98.73 86.92
TraesCS1B01G232200.2 Wheat plastid 98.09 86.68
Os12t0409000-01 Rice plasma membrane 90.23 80.04
EES16245 Sorghum plastid 90.02 77.66
HORVU2Hr1G110110.2 Barley mitochondrion, plastid 83.44 71.32
Zm00001d030859_P001 Maize plastid 88.11 65.98
HORVU4Hr1G011500.1 Barley plasma membrane 59.02 52.16
HORVU3Hr1G082070.2 Barley cytosol 62.63 50.26
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10MapMan:4.1.4.3.1UniProt:A0A287FPY6GO:GO:0003674GO:GO:0003824
GO:GO:0004372GO:GO:0005488GO:GO:0006545GO:GO:0006730GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0019264GO:GO:0030170GO:GO:0035999
EnsemblPlantsGene:HORVU1Hr1G055860EnsemblPlants:HORVU1Hr1G055860.2InterPro:IPR015421InterPro:IPR015422HAMAP:MF_00051PFAM:PF00464
PIRSF:PIRSF000412ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF11InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI0001D62D40SEG:seg
Description
Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A287FPY6]
Coordinates
chrchr1H:-:409308086..409311661
Molecular Weight (calculated)
51811.0 Da
IEP (calculated)
6.903
GRAVY (calculated)
-0.256
Length
471 amino acids
Sequence
(BLAST)
001: MDAVADWGLT PLAEADPEVY DLIEREKRRQ RTGIELIASE NFTSLAVMQA LGSPLTNKYS EGMPGARYYG GNEVIDEVEE LCRARALKAF HLDPASWGVN
101: VQPYSGSPAN FAAYTGLLQP HERIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFSSLPYK VSSDTGYVDY DRLEEKAMDF RPKLIICGGS AYPRDWDYAR
201: LRAIADKCGA MLLCDMAHIS GLVAAQEATN PFEYSDVVTT TTHKSLRGPR SGMIFYRKGP KPPKKGQPEG ALYDYEDKIN FAVFPSLQGG PHNHQIAALA
301: VGLKQAMLPG FKAYIQQVKV NAVALGNHLM SKGYKLVTDG TENHLVLWDL RPLGLSGNKV EKVCDLSSIT LNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFVKIAE YLHQAVVICL NVQKQRGKRY NDFIVDLEKN EDIAELRAEV EKFAISFEMP GFLVSDMKYK D
Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)
001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
Arabidopsis Description
SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.