Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G220400.1 | Wheat | golgi | 98.73 | 87.24 |
TraesCS1A01G218700.1 | Wheat | golgi | 98.73 | 86.92 |
TraesCS1B01G232200.2 | Wheat | plastid | 98.09 | 86.68 |
Os12t0409000-01 | Rice | plasma membrane | 90.23 | 80.04 |
EES16245 | Sorghum | plastid | 90.02 | 77.66 |
HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 83.44 | 71.32 |
Zm00001d030859_P001 | Maize | plastid | 88.11 | 65.98 |
HORVU4Hr1G011500.1 | Barley | plasma membrane | 59.02 | 52.16 |
HORVU3Hr1G082070.2 | Barley | cytosol | 62.63 | 50.26 |
Protein Annotations
KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | MapMan:4.1.4.3.1 | UniProt:A0A287FPY6 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004372 | GO:GO:0005488 | GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 |
EnsemblPlantsGene:HORVU1Hr1G055860 | EnsemblPlants:HORVU1Hr1G055860.2 | InterPro:IPR015421 | InterPro:IPR015422 | HAMAP:MF_00051 | PFAM:PF00464 |
PIRSF:PIRSF000412 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF11 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 |
InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI0001D62D40 | SEG:seg |
Description
Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A287FPY6]
Coordinates
chrchr1H:-:409308086..409311661
Molecular Weight (calculated)
51811.0 Da
IEP (calculated)
6.903
GRAVY (calculated)
-0.256
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAVADWGLT PLAEADPEVY DLIEREKRRQ RTGIELIASE NFTSLAVMQA LGSPLTNKYS EGMPGARYYG GNEVIDEVEE LCRARALKAF HLDPASWGVN
101: VQPYSGSPAN FAAYTGLLQP HERIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFSSLPYK VSSDTGYVDY DRLEEKAMDF RPKLIICGGS AYPRDWDYAR
201: LRAIADKCGA MLLCDMAHIS GLVAAQEATN PFEYSDVVTT TTHKSLRGPR SGMIFYRKGP KPPKKGQPEG ALYDYEDKIN FAVFPSLQGG PHNHQIAALA
301: VGLKQAMLPG FKAYIQQVKV NAVALGNHLM SKGYKLVTDG TENHLVLWDL RPLGLSGNKV EKVCDLSSIT LNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFVKIAE YLHQAVVICL NVQKQRGKRY NDFIVDLEKN EDIAELRAEV EKFAISFEMP GFLVSDMKYK D
101: VQPYSGSPAN FAAYTGLLQP HERIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFSSLPYK VSSDTGYVDY DRLEEKAMDF RPKLIICGGS AYPRDWDYAR
201: LRAIADKCGA MLLCDMAHIS GLVAAQEATN PFEYSDVVTT TTHKSLRGPR SGMIFYRKGP KPPKKGQPEG ALYDYEDKIN FAVFPSLQGG PHNHQIAALA
301: VGLKQAMLPG FKAYIQQVKV NAVALGNHLM SKGYKLVTDG TENHLVLWDL RPLGLSGNKV EKVCDLSSIT LNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFVKIAE YLHQAVVICL NVQKQRGKRY NDFIVDLEKN EDIAELRAEV EKFAISFEMP GFLVSDMKYK D
001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
Arabidopsis Description
SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.