Factsheet for TraesCS1B01G232200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055860.2	Barley	plasma membrane	86.68	98.09
TraesCS1D01G220400.1	Wheat	golgi	97.56	97.56
TraesCS1A01G218700.1	Wheat	golgi	97.56	97.2
Os12t0409000-01	Rice	plasma membrane	85.55	85.88
TraesCS2B01G521700.1	Wheat	cytosol	73.73	83.44
EES16245	Sorghum	plastid	84.8	82.78
Zm00001d030859_P001	Maize	plastid	83.11	70.43
TraesCS3B01G417800.1	Wheat	cytosol	56.66	58.64
TraesCS4B01G069300.1	Wheat	mitochondrion	52.16	54.51

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:TraesCS1B01G232200
EnsemblPlants:TraesCS1B01G232200.2	TIGR:cd00378	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:417264913..417268216

Molecular Weight (calculated)

58179.5 Da

IEP (calculated)

7.886

GRAVY (calculated)

-0.259

Length

533 amino acids

Sequence
(BLAST)

001: MAMAAPHVSH SQPPVGRAAL FSHPTTAQSS SPLRLPLLRA TARPVRLYAV STDAAPATAA AAMDAVADWG LTPLAEADPE VYDLIEREKR RQRTGIELIA
101: SENFTSLAVM EALGSPLTNK YSEGMPGARY YGGNEVIDEV EELCRARALK AFHLDPASWG VNVQPYSGSP ANFAAYTGLL QPHERIMGLD LPSGGHLTHG
201: YYTAGGKKIS ATSIYFDSLP YKVSSDTGYV DYDRLEEKAM DFRPKLIICG GSAYPRDWDY ARLRAIADKC GAMLLCDMAH ISGLVAAQEA TNPFEYSDVV
301: TTTTHKSLRG PRSGMIFYRK GPKPTKKGQP EGALYDYEDK INFAVFPSLQ GGPHNHQIAA LAVGLKQAMS PGFKAYIQQV KANAVALGNQ LMRKGYKLVT
401: DGTENHLVLW DLRPLGLSGN KVEKVCDLSS ITLNKNAVFG DSSALAPGGV RIGTPAMTSR GLVEKDFVKI AEYLHQAVVI CLNVQKQRGK RYNDFTVDLE
501: KNEDIAELRA EVEKFAISFE MPGFRVSDMK YKD

Best Arabidopsis Sequence Match ( AT4G13890.1 )
(BLAST)

001: MEPVYSWGNT HLDFVDPEIY DLIEKEKHRQ CRGIELIAAE NFTSVAVMEA LGSCLTNKYS EGMPGNRYYG GTEFIDEIES LCRSRSLEAF HCNPEKWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHITHGYY SSGGKNISAT SIYFENLPYK VDSKTGYIDY DKLEEKAMDF RPKLIICGGT SYPREWDYAR
201: FRAVADKVGA FLLCDMAHNS ALVAAQEAAD PFEYCDVVTT STHKSLRGPR AGMIFYRKGP KPAKKGQPEG EVYDFDAKIN SAVFPALQSG PHNNKIGALA
301: VALKQVMAPS FKVYAKQVKA NAACLASYLI NKGYTLVTDG TDNHLILWDL RPLGLTGNKV EKVCELCYIT LNRNAVFGDT SFLAPGGVRI GTPAMTSRGL
401: VEKDFEKIGE FLHRAVTITL DIQEQYGKVM KDFNKGLVNN KEIDEIKADV EEFTYDFDMP GFFISESRND

Arabidopsis Description

SHM5Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.