CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055860.2	Barley	plasma membrane	77.66	90.02
Os12t0409000-01	Rice	plasma membrane	82.97	85.31
EES08452	Sorghum	cytosol	73.44	85.14
TraesCS1D01G220400.1	Wheat	golgi	82.97	84.99
TraesCS1B01G232200.2	Wheat	plastid	82.78	84.8
TraesCS1A01G218700.1	Wheat	golgi	82.97	84.67
Zm00001d030859_P001	Maize	plastid	91.39	79.33
OQU91027	Sorghum	mitochondrion	50.73	54.0
EES01843	Sorghum	cytosol	55.13	50.76

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:8069699	UniProt:C5YQS6	EnsemblPlants:EES16245
ProteinID:EES16245	ProteinID:EES16245.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	MetaCyc:PWY-1622
MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841
MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3008G144800	SUPFAM:SSF53383
unigene:Sbi.9037	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0001A8867A	RefSeq:XP_002442407.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:57629105..57632941

Molecular Weight (calculated)

59300.0 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.207

Length

546 amino acids

Sequence
(BLAST)

001: MASTHHLTSP AAAAATSATT FSRAALIKHA YARPSCSLLH APLLRAAPRP ALLSSAPAPA AAVSTTAAPA AAADAMDAVE DWGLRPLSEV DPEVYDLIER
101: EKRRQRSGIE LIASENFTSL AVMEALGSPL TNKYSEGMPG ARYYGGNEVI DEVEELCRAR ALAAFRLDPE RWGVNVQPYS GSPANFAAYT GLLQPHDRIM
201: GLDLPSGGHL THGYYTAGGK KISATSIYFQ SLPYKVSSDT GYVDYDKLEE KAMDFRPKLI ICGGSAYPRE WDYARLRAIA DKCGAMLLCD MAHISGLVAA
301: QEALNPFEYS DVVTTTTHKS LRGPRSGMIF YRKGPKPPKK GQPEGALYDY EDKINFAVFP SLQGGPHNHQ IAALAVALKQ AMSPGFKAYI QQVKANTVAL
401: GNHLMSKGYK LVTDGTENHL VLWDLRPLGL TGNKVEMLCD LCNITLNKNA VFGDSSAMTP GGVRIGTPAM TSRGLVEKDF VQIAEYLHQA VTICLSIQEE
501: HGKLLRDFKK GLVGNKDIEN LRAEVEKFAT SFEMPGFRVS DMKYTD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.