CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU80649
OQU89635

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	OQU80649	AT4G24560.1	23232097
AT4G13930.1	OQU89635	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0455800-01	Rice	plasma membrane	94.48	94.48
TraesCS2D01G493600.1	Wheat	cytosol	91.93	91.93
TraesCS2A01G493700.1	Wheat	plastid	91.93	91.93
TraesCS2B01G521700.1	Wheat	cytosol	91.72	91.72
GSMUA_Achr8P00310_001	Banana	cytosol	47.35	88.49
GSMUA_Achr6P06520_001	Banana	cytosol	82.38	87.19
Zm00001d049234_P001	Maize	plastid	97.24	87.07
VIT_05s0029g00310.t01	Wine grape	cytosol	86.62	86.62
GSMUA_Achr9P01620_001	Banana	cytosol	80.47	86.53
AT4G13930.1	Thale cress	cytosol	86.2	86.2
Bra032749.1-P	Field mustard	cytosol	85.77	85.77
CDY69223	Canola	cytosol	85.56	85.56
Solyc05g053810.2.1	Tomato	nucleus, plastid	85.56	85.56
GSMUA_Achr9P07310_001	Banana	cytosol	73.25	85.19
PGSC0003DMT400040717	Potato	cytosol	85.14	85.14
CDY01173	Canola	cytosol	78.34	85.02
CDY50421	Canola	cytosol	78.34	85.02
PGSC0003DMT400011868	Potato	cytosol	84.71	84.71
Bra014001.1-P	Field mustard	cytosol	77.92	84.56
CDY47310	Canola	cytosol	77.92	84.56
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	84.29	84.29
KRH58850	Soybean	cytosol	83.86	82.46
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	91.93	78.58
AT4G13890.1	Thale cress	cytosol	76.01	76.17
EES16245	Sorghum	plastid	85.14	73.44
KRH42751	Soybean	endoplasmic reticulum, nucleus	85.35	70.28
OQU91027	Sorghum	mitochondrion	57.75	53.02
EES01843	Sorghum	cytosol	60.93	48.4

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:8075758	UniProt:C5Y297	EnsemblPlants:EES08452
ProteinID:EES08452	ProteinID:EES08452.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11
MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1
MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3005G113300
SUPFAM:SSF53383	unigene:Sbi.17859	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0000F6CACB	RefSeq:XP_002449464.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:41252790..41257286

Molecular Weight (calculated)

51801.1 Da

IEP (calculated)

7.271

GRAVY (calculated)

-0.260

Length

471 amino acids

Sequence
(BLAST)

001: MDPVATWGLT PLAGADPEIY DLLEREKRRQ RRGIELIASE NFTSFAVMEA LGSPLTNKYS EGMPGARYYG GNDVIDEIEN LCRSRALAAF RLDAAFWGVN
101: VQPYSGSPAN FAAYTALLNP HDRIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFESLPYK VSATTGYIDY EKLEEKALDF RPKLIICGGS AYPRDWDYSR
201: LRAIADKVGA LLLCDMAHIS GLVAAEEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDYEDKIN FAVFPSLQGG PHNHQIAALA
301: VALQQTMTPG FKAYAKQVKA NAVAIGNYLM SKGYKMVTDG TENHLVLWDL RPLGLTGNKV EKLCDLCHIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLHQAVTICL NIQKEYGKLL KDFNKGLLNN KDIENLKTQV EKFADSFDMP GFTLESMKYK E

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.