Factsheet for GSMUA_Achr6P06520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr5P22990_001
GSMUA_Achr7P19010_001
GSMUA_Achr7P19020_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	GSMUA_Achr10P...	AT4G24560.1	23232097
AT4G13930.1	GSMUA_Achr10P...	AT4G24560.1	23232097
AT4G13930.1	GSMUA_Achr5P22990_001	AT4G24560.1	23232097
AT4G13930.1	GSMUA_Achr7P19010_001	AT4G24560.1	23232097
AT4G13930.1	GSMUA_Achr7P19020_001	AT4G24560.1	23232097
AT4G13930.1	GSMUA_AchrUn_...	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00310_001	Banana	cytosol	54.16	95.63
GSMUA_Achr9P07310_001	Banana	cytosol	83.6	91.85
GSMUA_Achr9P01620_001	Banana	cytosol	90.11	91.55
VIT_05s0029g00310.t01	Wine grape	cytosol	91.24	86.2
Solyc05g053810.2.1	Tomato	nucleus, plastid	89.21	84.29
PGSC0003DMT400040717	Potato	cytosol	88.54	83.65
PGSC0003DMT400011868	Potato	cytosol	87.87	83.01
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	87.64	82.8
Os11t0455800-01	Rice	plasma membrane	87.64	82.8
AT4G13930.1	Thale cress	cytosol	87.42	82.59
Bra032749.1-P	Field mustard	cytosol	87.42	82.59
EES08452	Sorghum	cytosol	87.19	82.38
TraesCS2D01G493600.1	Wheat	cytosol	86.97	82.17
TraesCS2A01G493700.1	Wheat	plastid	86.97	82.17
CDY69223	Canola	cytosol	86.97	82.17
TraesCS2B01G521700.1	Wheat	cytosol	86.74	81.95
CDY01173	Canola	cytosol	79.55	81.57
CDY50421	Canola	cytosol	79.55	81.57
Bra014001.1-P	Field mustard	cytosol	78.88	80.88
CDY47310	Canola	cytosol	78.88	80.88
KRH58850	Soybean	cytosol	86.07	79.96
Zm00001d049234_P001	Maize	plastid	87.42	73.95
AT4G13890.1	Thale cress	cytosol	77.08	72.98
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	86.97	70.24
Zm00001d040457_P001	Maize	mitochondrion	15.06	69.07
KRH42751	Soybean	endoplasmic reticulum, nucleus	87.42	68.01
GSMUA_Achr10P...	Banana	cytosol	52.36	61.32
GSMUA_Achr7P27360_001	Banana	mitochondrion	59.33	51.36
GSMUA_Achr6P23140_001	Banana	mitochondrion	57.98	49.62
GSMUA_Achr3P30760_001	Banana	mitochondrion	55.96	47.52
GSMUA_Achr6P17750_001	Banana	cytosol	58.88	45.8
GSMUA_Achr10P...	Banana	cytosol	57.53	44.52
GSMUA_Achr10P...	Banana	vacuole	13.26	34.71

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.40.640.10
Gene3D:3.90.1150.10	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSMUA_Achr6G06520_001	EnsemblPlants:GSMUA_Achr6P06520_001
EnsemblPlants:GSMUA_Achr6T06520_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0T4Q0	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI000294CC1D	SEG:seg

Description

Serine hydroxymethyltransferase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06520_001]

Coordinates

chr6:-:4399234..4403515

Molecular Weight (calculated)

48922.6 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.245

Length

445 amino acids

Sequence
(BLAST)

001: MESVSEWGLS PLSAVDPEIH DLIEHEKRRQ SHGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GNEHIDAIEN LCRSRALAAY RLDPAKWGVN
101: VQPYSGSPAN FAAYTALLNP HDRIMGLDLP LPYKVSYATG YIDYDKLEEK ALDFRPKLII CGGSAYPRDW DYARFRSIAD KCGALLLCDM AHISGLVAAQ
201: EAANPFEFCD VVTTTTHKSL RGPRSGMIFY RKGPKPPKKG QPEDAVYDFE DKINFSVFPA LQGGPHNHQI AALAVALKQA MSPGFKAYAK QVKANAVALG
301: NYLMSKGYKL VTDGTENHLV LWDLRPLGLT GNKVEKLCDL CNITVNKNAV FGDSSALAPG GVRIGTPAMT SRGLVEKDFE QIAEFLHQAV TICLSIQKEH
401: GKLLKDFNKG LVNNKDIEEL KAAVEKFAAS FDMPGFQMSA MKYKD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.