Factsheet for GSMUA_Achr7P27360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30760_001	Banana	mitochondrion	92.41	90.65
GSMUA_Achr6P23140_001	Banana	mitochondrion	90.08	89.04
VIT_18s0001g07960.t01	Wine grape	mitochondrion	87.74	87.4
Os03t0738400-01	Rice	mitochondrion	86.97	87.13
OQU91027	Sorghum	mitochondrion	85.8	85.96
TraesCS4A01G246100.1	Wheat	mitochondrion	85.02	85.69
TraesCS4D01G068100.1	Wheat	mitochondrion	85.02	85.69
TraesCS4B01G069300.1	Wheat	mitochondrion	85.02	85.69
Solyc04g076790.2.1	Tomato	nucleus	85.21	84.72
KRH16896	Soybean	mitochondrion	83.46	84.62
PGSC0003DMT400016362	Potato	mitochondrion	85.41	84.59
CDX96315	Canola	mitochondrion	84.24	84.24
CDY49212	Canola	mitochondrion	83.27	84.09
KRH72501	Soybean	mitochondrion	83.85	83.85
Bra016147.1-P	Field mustard	mitochondrion	84.05	82.6
CDX72795	Canola	mitochondrion	84.44	81.89
HORVU4Hr1G011500.1	Barley	plasma membrane	84.82	81.8
AT5G26780.3	Thale cress	mitochondrion	83.85	80.86
GSMUA_Achr10P...	Banana	cytosol	49.42	66.84
GSMUA_Achr6P06520_001	Banana	cytosol	51.36	59.33
GSMUA_Achr9P01620_001	Banana	cytosol	49.22	57.76
GSMUA_Achr9P07310_001	Banana	cytosol	45.14	57.28
GSMUA_Achr8P00310_001	Banana	cytosol	27.24	55.56
Zm00001d009738_P001	Maize	cytosol, plastid	20.04	47.47
GSMUA_Achr6P17750_001	Banana	cytosol	47.08	42.31
GSMUA_Achr10P...	Banana	cytosol	46.11	41.22
Bra003928.1-P	Field mustard	mitochondrion	80.35	37.11
CDX68316	Canola	mitochondrion	83.85	36.84
GSMUA_Achr10P...	Banana	vacuole	12.06	36.47

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSMUA_Achr7G27360_001	EnsemblPlants:GSMUA_Achr7P27360_001
EnsemblPlants:GSMUA_Achr7T27360_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0TL72	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI00029608D7	SEG:seg

Description

Serine hydroxymethyltransferase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr7G27360_001]

Coordinates

chr7:+:28415851..28422168

Molecular Weight (calculated)

56663.1 Da

IEP (calculated)

8.493

GRAVY (calculated)

-0.233

Length

514 amino acids

Sequence
(BLAST)

001: MASALRRLSS SAAKTQPFLR TSLCYMSSLP SEAVYEKEVR VSWPKQLNAP LEVVDPEIAD IIELEKARQC KGLELIPSEN FTSVSVMQAV GSIMTNKYSE
101: GYPGARYYGG NEYIDMAESL CQKRALEAFH LDPAKWGVNV QSLSGSPANF QVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI FFETMPYRLN
201: ESTGYIDYDQ LEKSATLFRP KLIVAGASAY ARLYDYARIR KVCDKQKAIL LADMAHISGL VAGGVIPSPF DYADVVTTTT HKSLRGPRGA MIFFRKGVKE
301: INKQGKEVMY DFEEKINAAV FPGLQGGPHN HTIAGLAVAL KQATTPEYKA YQEQVLSNCA RFAQCLIEKG YELVSGGTEN HLVLVNLKNK GIDGSRVEKV
401: LELVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVADFFD TAVKLSLKTK AETKGGSKLK DFLATIQTDA NIQSEIAKLR HEVEEFAKQF
501: PTIGFEKETM KYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.