CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49212	Canola	mitochondrion	43.08	99.02
CDX96315	Canola	mitochondrion	42.48	96.69
Bra003928.1-P	Field mustard	mitochondrion	89.74	94.34
CDX72795	Canola	mitochondrion	42.65	94.15
AT5G26780.3	Thale cress	mitochondrion	41.28	90.62
VIT_18s0001g07960.t01	Wine grape	mitochondrion	38.38	87.02
CDX90395	Canola	cytosol	25.81	86.29
PGSC0003DMT400016362	Potato	mitochondrion	37.95	85.55
Solyc04g076790.2.1	Tomato	nucleus	37.69	85.3
KRH72501	Soybean	mitochondrion	37.18	84.63
KRH16896	Soybean	mitochondrion	36.67	84.62
CDX69344	Canola	mitochondrion	37.35	84.53
CDX75685	Canola	mitochondrion	37.18	84.14
GSMUA_Achr7P27360_001	Banana	mitochondrion	36.84	83.85
CDY49684	Canola	mitochondrion	36.92	83.56
GSMUA_Achr6P23140_001	Banana	mitochondrion	36.92	83.08
GSMUA_Achr3P30760_001	Banana	mitochondrion	35.9	80.15
CDY50421	Canola	cytosol	21.28	57.37
CDY47310	Canola	cytosol	21.28	57.37
CDY01173	Canola	cytosol	21.28	57.37
CDY69223	Canola	cytosol	23.08	57.32
CDY39889	Canola	plastid	25.3	51.03
CDY23328	Canola	golgi, plasma membrane	26.32	49.68
Zm00001d009738_P001	Maize	cytosol, plastid	8.97	48.39
CDY30643	Canola	cytosol	21.54	43.52
CDY41499	Canola	cytosol	21.2	43.43
CDY38837	Canola	cytosol	20.77	43.16
CDX91734	Canola	cytosol	21.45	42.61
CDY04695	Canola	cytosol	21.37	42.59
CDY41886	Canola	cytosol	21.37	42.37
CDY47659	Canola	cytosol	3.33	28.68
CDY53135	Canola	cytosol	3.33	28.68

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:2.60.120.260	MapMan:20.4.3.4	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078BU70	EnsemblPlants:CDX68316
ProteinID:CDX68316	ProteinID:CDX68316.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00099612001	InterPro:Galactose-bd-like_sf	InterPro:IPR008979
InterPro:IPR012919	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	PFAM:PF07738
ScanProsite:PS00096	PFscan:PS51469	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-181
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF49785	SUPFAM:SSF53383	InterPro:SUN_dom
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	TMHMM:TMhelix	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EEE385
SEG:seg	:	:	:	:	:

Description

BnaA07g23560D

Coordinates

chrLK031787:+:4990809..4997661

Molecular Weight (calculated)

131940.0 Da

IEP (calculated)

6.465

GRAVY (calculated)

-0.393

Length

1170 amino acids

Sequence
(BLAST)

0001: MQRSRRALLL RRSVSEDASK GRNRLYKVSL SLVFLVWGLL LLSTLWISHG NDHKGNSLAG SVQNGDQDDV SADDTYEPVD APSLKSTSVH IPTAEEIKNT
0101: VDGNVTESKE DIRLVKQSEM VNSNTGLDND TETNASKLDQ LSRDVPLGFD EFKSRVPTTK DESLANQVSS VIHRIEPGGK EYNYAATSKG AKVLSSNKEA
0201: KGATSIISSD NDKYLRNPCS TEEKFVVIEL SEETLVNTIK IANFEHYSSN LKEFEILGSL VYPSDTWVHL GNFTALNMKN EQNFTLVDPQ WVRYLKLNFL
0301: SHYGSEFYCT LSLLEVYGVD AVERMLEDLI SIQDKNIVRL QEGDSEKPVQ VIEERSKQKE KEQETSPESV VVKAEVSIER KKLMDTVEEV KHYQPGSRMP
0401: GDTVLKILMQ KIRSLDLSLS VLESYLEELS SRYMMIFKEM DLEAIKRDKE VVAMRIELDG MKESQEKMKE EAMEMREWRR RVETELERTC YEKEKVMERL
0501: EQVVEKMEWM EKKGVAVFTI CVGFGALAVV AVILGKLIGL AEKPADLAWL LLLISSIFVM FLFFFFLVKS AESSRERFTA QAQSEKMLKI IECNGYGFDS
0601: DQAQRESSHV PGSINVLHRP DHTGKVKCRG SWRSEWVIRY VKCPEHTQQH STETQRIERE TMALALRRLS SSLKKPIFSN GGSFRSMSST PASERSRSTW
0701: IRQLNAPLEE IDPEIADIIE LEKARQWKGF ELIPSENFTS ASVMEAVGSV MTNKYSEGYP GARYYGGNEY IDMAESLCQK RALEAFHLDP SKWGVNVQSL
0801: SGSPANFQVY TALLKPHERI MALDLPHGGH LSHGYQTDTK KISAVSIFFE TMPYRLDENT GYIDYDQLEK SAVLFRPKLI VAGASAYARL YDYARIRKVC
0901: DKQKAVMLAD MAHISGLVAA GVIPSPFEYA DVVTTTTHKS LRGPRGAMIF FRKGLKEVNK QGKEVMYDYE DRINAAVFPG LQGGPHNHTI TGLAVALKQV
1001: KTPEYKAYQD QVLRNCSKFA ETLLSKGYDL VSGGTENHLV LVNLKNKGID GSRVEKVLES VHIAANKNTV PGDVSAMVPG GIRMGTPALT SRGFIEEDFA
1101: KVAEYFDLAV KIALKIKAES QGTKLKDFVA TMQSNEKLQS EMAKLREMVE EYAKQFPTIG FEKETMRYKE

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.