CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96315	Canola	mitochondrion	95.85	98.83
Bra016147.1-P	Field mustard	mitochondrion	96.04	97.32
CDY49212	Canola	mitochondrion	93.4	97.25
AT5G26780.3	Thale cress	mitochondrion	92.26	91.74
VIT_18s0001g07960.t01	Wine grape	mitochondrion	84.72	87.02
CDX90395	Canola	cytosol	56.98	86.29
Solyc04g076790.2.1	Tomato	nucleus	83.4	85.49
PGSC0003DMT400016362	Potato	mitochondrion	83.58	85.36
CDX69344	Canola	mitochondrion	82.83	84.91
KRH16896	Soybean	mitochondrion	81.13	84.81
KRH72501	Soybean	mitochondrion	82.08	84.63
CDX75685	Canola	mitochondrion	82.45	84.53
GSMUA_Achr7P27360_001	Banana	mitochondrion	81.89	84.44
CDY49684	Canola	mitochondrion	81.89	83.95
GSMUA_Achr6P23140_001	Banana	mitochondrion	81.7	83.27
GSMUA_Achr3P30760_001	Banana	mitochondrion	79.25	80.15
CDY50421	Canola	cytosol	46.79	57.14
CDY47310	Canola	cytosol	46.79	57.14
CDY01173	Canola	cytosol	46.79	57.14
CDY69223	Canola	cytosol	50.75	57.11
Zm00001d009738_P001	Maize	cytosol, plastid	19.81	48.39
CDY39889	Canola	plastid	52.83	48.28
CDY23328	Canola	golgi, plasma membrane	53.02	45.32
CDY30643	Canola	cytosol	46.98	43.01
CDY41499	Canola	cytosol	46.23	42.91
CDY38837	Canola	cytosol	45.47	42.81
CDX68316	Canola	mitochondrion	94.15	42.65
CDX91734	Canola	cytosol	46.79	42.11
CDY04695	Canola	cytosol	46.6	42.08
CDY41886	Canola	cytosol	46.6	41.86
CDY47659	Canola	cytosol	7.36	28.68
CDY53135	Canola	cytosol	7.36	28.68

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078C7K7	EnsemblPlants:CDX72795	ProteinID:CDX72795	ProteinID:CDX72795.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00103180001	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-181
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EF47E0	SEG:seg	:	:

Description

BnaC06g32430D

Coordinates

chrLK031797:-:288133..291891

Molecular Weight (calculated)

58775.8 Da

IEP (calculated)

8.745

GRAVY (calculated)

-0.269

Length

530 amino acids

Sequence
(BLAST)

001: MALALRRLSS SLKKPIFSNG VSLRSMSSLP TSAMADSERS RSSWIKQLNA PLEEIDPEIA DIIELEKARQ WKGFELIPSE NFTSASVMEA VGSVMTNKYS
101: EGYPGARYYG GNEYIDMAES LCQKRALEAF HLDPSKWGVN VQSLSGSPAN FQVYTALLKP HERIMALDLP HGGHLSHGYQ TDTKKISAVS IFFETMPYRL
201: DESTGYIDYD QLEKSAVLFR PKLIVAGASA YARLYDYARI RKVCDKQKAV MLADMAHISG LVAAGVIPSP FEYADVVTTT THKSLRGPRG AMIFFRKGLK
301: EVNKQGKEVM YDYEDRINAA VFPGLQGGPH NHTITGLAVA LKQVKSPEYK AYQDQVLRNC SKFAEVRCLS KLVDIPQVSC HTLLSKGYDL VSGGTDNHLV
401: LVNLKNKGID GSRVEKVLES VHIAANKNTV PGDVSAMVPG GIRMGTPALT SRGFIEEDFA KVAEYFDLAV KIALKIKAES QGTKLKDFVA TMQSNEKLQS
501: EMAKLREMIE EYAKQFPTIG FEKETMRYKE

Best Arabidopsis Sequence Match ( AT5G26780.2 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAELD IRPTVIISYG LSMQTLLAKG YDLVSGGTDN
401: HLVLVNLKNK GIDGSRVEKV LELVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFIEE DFAKVAEYFD LAVKIALKIK AESQGTKLKD FVATMQSNEK
501: LQSEMSKLRE MVEEYAKQFP TIGFEKETMR YKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.