CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41886	Canola	cytosol	98.47	98.31
AT1G36370.1	Thale cress	plastid	91.51	90.13
CDY30643	Canola	cytosol	70.12	71.33
CDY38837	Canola	cytosol	68.08	71.23
CDY04695	Canola	cytosol	70.8	71.04
TraesCS3B01G417800.1	Wheat	cytosol	61.97	70.87
CDY41499	Canola	cytosol	68.59	70.75
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	70.12	70.72
KRH64759	Soybean	cytosol, peroxisome	12.22	69.23
GSMUA_Achr6P17750_001	Banana	cytosol	66.72	68.71
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	63.67	68.43
TraesCS3D01G378700.1	Wheat	cytosol	64.69	65.35
TraesCS3A01G385600.1	Wheat	cytosol	64.69	65.13
HORVU3Hr1G082070.2	Barley	cytosol	64.52	64.74
GSMUA_Achr10P...	Banana	cytosol	63.16	64.7
CDY01173	Canola	cytosol	47.37	64.29
CDY47310	Canola	cytosol	47.37	64.29
CDY50421	Canola	cytosol	47.37	64.29
CDY69223	Canola	cytosol	51.1	63.91
Os01t0874900-01	Rice	extracellular	65.03	63.83
Zm00001d012247_P001	Maize	cytosol	63.33	63.76
Zm00001d042661_P001	Maize	cytosol	62.82	62.93
EES01843	Sorghum	cytosol	63.33	62.9
Os05t0429000-01	Rice	cytosol	61.46	61.67
KRH64758	Soybean	cytosol	50.93	60.24
CDY53135	Canola	cytosol	12.9	55.88
CDY47659	Canola	cytosol	12.9	55.88
CDY49212	Canola	mitochondrion	42.44	49.12
GSMUA_Achr10P...	Banana	vacuole	14.09	48.82
CDX96315	Canola	mitochondrion	42.27	48.44
CDX90395	Canola	cytosol	28.69	48.29
CDY49684	Canola	mitochondrion	42.27	48.16
CDX69344	Canola	mitochondrion	42.11	47.97
CDX75685	Canola	mitochondrion	41.94	47.78
CDX72795	Canola	mitochondrion	42.11	46.79
CDY39889	Canola	plastid	41.6	42.24
CDY23328	Canola	golgi, plasma membrane	41.43	39.35
CDX68316	Canola	mitochondrion	42.61	21.45

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:A0A078DTB7	EnsemblPlants:CDX91734	ProteinID:CDX91734
ProteinID:CDX91734.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00153238001	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	MetaCyc:PWY-1622
MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841
MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EE1771	SEG:seg	:

Description

BnaC08g06530D

Coordinates

chrLK031869:+:618371..620874

Molecular Weight (calculated)

64960.7 Da

IEP (calculated)

7.765

GRAVY (calculated)

-0.346

Length

589 amino acids

Sequence
(BLAST)

001: MDLSGSDSNV SLGFGCSHAS SSMAPTPRIP IADDSINLQV DPSFRSSPAT FPPIPLQLLE QKVAAVEEPK KGGDEKEDEH FRILGHHMCL KRQRDCPLLL
101: AQSKHPRRTI AGDTDLESRR AAVRAWGDQP LHLADPDIHE IMEKEKQRQV KGIELIASEN FVCRAVMEAL GSHLTNKYSE GMPGARYYTG NQYIDQIENL
201: CIGRALAAFG LESDKWGVNV QPYSCTSANF AVYTALLLPG ERIMGLDSPS GGHMSHGYCT PAGKKISATS IFFESFPYKV NPQTGYIDYD KLEDKALDYR
301: PKILICGGSS YPRDWDFSRV RQIADKCGAV LMCDMAHISG LVATKECSNP FDHCDIVTST THKGLRGPRG GIIFYRRGPK IRKQAHHSSH CDSSTHYDLE
401: EKINFAVFPS LQGGPHNNHI AALAIALKQV ATPEYKAYVQ QMKKNAQALA SALLRRKCRL VTGGTDNHLL LWDLTPLGLT GKVYEKVCEM CHITLNKTAI
501: FGDNGTISPG GVRIGTPAMT TRGCVESDFE TIADFLMKAA QITSALQREH GKSHKEFVKS LCSNKEICDL RNRVEAFALQ YEMPAASQI

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.