CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	80.72	73.36
KRH26369	Soybean	cytosol	62.05	54.88
TraesCS3B01G417800.1	Wheat	cytosol	56.63	54.76
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	63.86	54.45
KRH44066	Soybean	plastid	61.85	54.42
KRH18830	Soybean	cytosol, peroxisome, plastid	13.65	52.71
CDY30643	Canola	cytosol	60.84	52.33
CDY38837	Canola	cytosol	59.04	52.22
Bra031358.1-P	Field mustard	cytosol	61.04	52.14
CDY04695	Canola	cytosol	61.04	51.79
CDY41499	Canola	cytosol	59.24	51.66
Bra016392.1-P	Field mustard	cytosol	59.24	51.04
CDX91734	Canola	cytosol	60.24	50.93
Bra036774.1-P	Field mustard	cytosol	60.24	50.85
CDY41886	Canola	cytosol	60.24	50.85
KRH07754	Soybean	cytosol, nucleus, peroxisome	21.89	50.46
KRH58850	Soybean	cytosol	48.39	50.31
GSMUA_Achr6P17750_001	Banana	cytosol	57.63	50.17
AT1G36370.1	Thale cress	plastid	60.24	50.17
AT1G22020.1	Thale cress	cytosol	60.24	50.08
TraesCS3D01G378700.1	Wheat	cytosol	58.03	49.57
TraesCS3A01G385600.1	Wheat	cytosol	58.03	49.4
HORVU3Hr1G082070.2	Barley	cytosol	58.03	49.23
Zm00001d012247_P001	Maize	cytosol	57.43	48.89
GSMUA_Achr10P...	Banana	vacuole	16.67	48.82
KRH26204	Soybean	cytosol	19.48	48.74
Os05t0429000-01	Rice	cytosol	57.23	48.55
EES01843	Sorghum	cytosol	57.43	48.23
GSMUA_Achr10P...	Banana	cytosol	55.62	48.17
Zm00001d042661_P001	Maize	cytosol	56.63	47.96
Os01t0874900-01	Rice	extracellular	57.43	47.67
KRH11117	Soybean	plastid	20.08	44.05
KRH42751	Soybean	endoplasmic reticulum, nucleus	50.0	43.53
KRH16896	Soybean	mitochondrion	41.37	40.63
KRH72501	Soybean	mitochondrion	41.57	40.27
KRH45493	Soybean	mitochondrion	41.77	40.15
KRG99502	Soybean	mitochondrion	41.57	39.96
KRH39500	Soybean	mitochondrion	40.76	39.27
KRH21130	Soybean	plastid	40.56	37.69
KRH11116	Soybean	cytosol	15.06	30.74
KRH64759	Soybean	cytosol, peroxisome	0.0	0.0

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.40.640.10
Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	UniProt:A0A0R0KCM6	EMBL:ACUP02002772	EnsemblPlantsGene:GLYMA_04G2543002	GO:GO:0003674
GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH64758	ProteinID:KRH64758	ProteinID:KRH64758.1
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF27	MetaCyc:PWY-1622
MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841
MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0006ED8D5C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:52099168..52101585

Molecular Weight (calculated)

55850.4 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.307

Length

498 amino acids

Sequence
(BLAST)

001: MVDHDLQQET QKDSYISTLC SLLNHYLPFF HSPVLSVSLF PSSRQNAHFP ISHFPFLVQP MDSQPGLSLG LSVPLSSPAA PLCDTTSVLW RLFNKRHPIK
101: EEEEEDEDYG ETINFMDQSV KRKIEGHQQP CFPSKRVAVD SSVGWWNQPL GVADPEIFYI MGKEKQRQFK GIELIASENF VCRAVMEALG SHLSNKYSEG
201: MPGAKYYTGN QYIDEIEFLC CQRALLAFDL HPNNWGVNVQ PYSCTSANFA VYTGILHPGD RIMGLDSPSG GHLSHGYYTL GGKKVSAASI FFETLPYKVN
301: PQSGYIDYDK LEEKALDFRP KILICGGSSY PREWDYARFR QVADKCGAVL MCDMAHISGL VAAKEVASPF DYCDIVTSTT HKSLRGPRGG IIFYRRGAKP
401: RKQGFVHNHG DDSNYDFEEK INFALYPSLQ GGPHNNHIAA LAIALKQVAT PEYKAYMQQV KRNAQALASA LLRRNFRLVT DGTDNHLLLW DLTALGLI

Best Arabidopsis Sequence Match ( AT1G22020.1 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.