CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99502	Soybean	mitochondrion	86.07	85.91
KRH45493	Soybean	mitochondrion	86.07	85.91
PGSC0003DMT400078666	Potato	mitochondrion	83.75	83.59
Solyc02g091560.2.1	Tomato	plastid	82.98	82.82
Os03t0738400-01	Rice	mitochondrion	80.66	81.29
OQU91027	Sorghum	mitochondrion	80.66	81.29
TraesCS4D01G068100.1	Wheat	mitochondrion	79.3	80.39
TraesCS4B01G069300.1	Wheat	mitochondrion	79.3	80.39
TraesCS4A01G246100.1	Wheat	mitochondrion	79.3	80.39
KRH16896	Soybean	mitochondrion	78.72	80.28
KRH72501	Soybean	mitochondrion	79.69	80.16
HORVU4Hr1G011500.1	Barley	plasma membrane	79.5	77.11
KRH26204	Soybean	cytosol	21.28	55.28
KRH11116	Soybean	cytosol	25.92	54.92
KRH07754	Soybean	cytosol, nucleus, peroxisome	22.82	54.63
KRH58850	Soybean	cytosol	50.1	54.07
KRH21130	Soybean	plastid	53.58	51.68
KRH11117	Soybean	plastid	21.28	48.46
KRH42751	Soybean	endoplasmic reticulum, nucleus	51.45	46.5
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	47.58	44.89
Zm00001d009738_P001	Maize	cytosol, plastid	18.57	44.24
KRH44066	Soybean	plastid	48.36	44.17
KRH26369	Soybean	cytosol	47.97	44.05
KRH64758	Soybean	cytosol	39.27	40.76
KRH64759	Soybean	cytosol, peroxisome	8.12	40.38
KRH18830	Soybean	cytosol, peroxisome, plastid	8.7	34.88

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100779843	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02005938	EnsemblPlantsGene:GLYMA_09G202000	GO:GO:0003674
GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	UniProt:I1L4U2	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH39500	ProteinID:KRH39500
ProteinID:KRH39500.1	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF29	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661
MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI00023C8570	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:42616428..42623029

Molecular Weight (calculated)

57070.2 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.264

Length

517 amino acids

Sequence
(BLAST)

001: MAMAMAMALG RLSSSFNKPL RPLFNAGSVY YKSSLPAEAA YDNEKSCDTE LNAPLEVVDP EIADIIELEK ARQWKGLELI PSENFTSVSV MQAIGSIITN
101: TRNEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPAKW GVNVQPLSGS SANFQVYTAL LKPHDRIMGL DLPHGGHLSH GYQTDTNKVS AVSLFFETMP
201: YRLNENTGHI DYDQLESTAK LFRPKLIVAG ATAYARLYDY ARIRKVCDKQ KAVLLADMAH ISGLVAAGVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINEKGE EVMYDYEDKI NRAVFPGLQS GPHFHSITGL AVALKQATTP NYRAYQEQVL RNCSKFAQAL SEKGYELVSG GTENHLLLVN LKSKGIDGSR
401: VQKVLESVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FAEEDFVMVA EFFDAAVNLA VKIKSETKGS KLKDFLATIQ SSSYFQSEIA KLRHDVEEYA
501: KQFPTIGFDK ETMKYNK

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.