CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23549
KRH26204
KRH44417
KRH47491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	KRH23549	AT3G15660.1	21798944
AT4G32520.1	KRH44417	AT3G15660.1	21798944
AT4G32520.1	KRH47491	AT3G15660.1	21798944
AT4G32520.1	KRH07754	AT4G32520.1	21798944
AT4G32520.1	KRH11116	AT4G32520.1	21798944
AT4G32520.1	KRH11117	AT4G32520.1	21798944
AT4G32520.1	KRH21130	AT4G32520.1	21798944
AT4G32520.1	KRH26204	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07754	Soybean	cytosol, nucleus, peroxisome	70.85	65.28
KRH11117	Soybean	plastid	60.3	52.86
PGSC0003DMT400002684	Potato	plastid	45.23	42.65
KRH21130	Soybean	plastid	84.42	31.34
GSMUA_Achr10P...	Banana	cytosol	59.8	31.32
Solyc12g095930.1.1	Tomato	plastid	74.87	28.27
Solyc08g065490.2.1	Tomato	nucleus, plastid	74.37	28.24
VIT_04s0008g00770.t01	Wine grape	plastid	74.37	28.03
AT4G32520.1	Thale cress	plastid	73.37	27.6
Bra040080.1-P	Field mustard	plastid	71.36	26.84
CDY39889	Canola	plastid	71.86	24.66
CDY23328	Canola	golgi, plasma membrane	71.36	22.9
KRH58850	Soybean	cytosol	53.77	22.34
KRH45493	Soybean	mitochondrion	57.79	22.2
KRG99502	Soybean	mitochondrion	57.79	22.2
KRH16896	Soybean	mitochondrion	56.28	22.09
KRH72501	Soybean	mitochondrion	56.78	21.98
KRH39500	Soybean	mitochondrion	55.28	21.28
KRH64758	Soybean	cytosol	48.74	19.48
KRH42751	Soybean	endoplasmic reticulum, nucleus	54.27	18.88
KRH26369	Soybean	cytosol	53.27	18.83
KRH44066	Soybean	plastid	52.26	18.37
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	50.25	18.25
KRH18830	Soybean	cytosol, peroxisome, plastid	4.52	6.98
KRH11116	Soybean	cytosol	2.01	1.64
KRH64759	Soybean	cytosol, peroxisome	0.5	0.96

Protein Annotations

EMBL:ACUP02007606	EnsemblPlants:KRH26204	EnsemblPlantsGene:GLYMA_12G159200	Gene3D:3.40.640.10	GO:GO:0003674	GO:GO:0003824
InterPro:IPR015421	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	PFAM:PF00464
ProteinID:KRH26204	ProteinID:KRH26204.1	SUPFAM:SSF53383	UniParc:UPI0006ED56E0	UniProt:A0A0R0H5U8	MapMan:35.1

Description

hypothetical protein

Coordinates

chr12:+:27610351..27612437

Molecular Weight (calculated)

22412.2 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.152

Length

199 amino acids

Sequence
(BLAST)

001: MQLQILGDGS SFLDYGLSEV DPEVHAIIDK EKDRQFKTVM EAVGSCLTNK YSEGLPSKRY YGGDEYIDEL ETLCQQRALA TFHVDGNKWG DCITLYGSLA
101: NFAVFTAVLK PHDRIMDLNL PHGGHLSHGF MTPKKCLIDY DMLEKTATLF RPKLIIAGAS AYPRDIDSPR MRKIADEVGA FLMMDMAQIY IVIIPRIKQ

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.