Factsheet for Solyc08g065490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 1
plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g067960.2.1
Solyc08g065490.2.1
Solyc12g095930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	Solyc06g067960.2.1	AT3G15660.1	21798944
AT4G32520.1	Solyc08g065490.2.1	AT4G32520.1	21798944
AT4G32520.1	Solyc12g095930.1.1	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005611	Potato	cytosol, plastid	98.09	98.09
Solyc12g095930.1.1	Tomato	plastid	87.02	86.53
GSMUA_Achr10P...	Banana	cytosol	61.26	84.47
KRH11116	Soybean	cytosol	38.36	82.38
VIT_04s0008g00770.t01	Wine grape	plastid	82.63	82.01
KRH21130	Soybean	plastid	80.53	78.73
AT4G32520.1	Thale cress	plastid	78.63	77.88
Bra040080.1-P	Field mustard	plastid	77.1	76.37
KRH26204	Soybean	cytosol	28.24	74.37
KRH07754	Soybean	cytosol, nucleus, peroxisome	30.53	74.07
KRH11117	Soybean	plastid	31.49	72.69
CDY39889	Canola	plastid	77.1	69.66
CDY23328	Canola	golgi, plasma membrane	76.91	65.0
Solyc05g053810.2.1	Tomato	nucleus, plastid	52.1	57.96
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	51.72	57.54
Solyc02g091560.2.1	Tomato	plastid	54.2	54.83
Solyc04g076790.2.1	Tomato	nucleus	53.82	54.55
Solyc01g104000.2.1	Tomato	plastid	46.76	41.25

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4CLC9	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc08g065490.2	EnsemblPlants:Solyc08g065490.2.1	UniParc:UPI000276B6CB	:

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:K4CLC9]

Coordinates

chr8:-:53602357..53606594

Molecular Weight (calculated)

56997.7 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.130

Length

524 amino acids

Sequence
(BLAST)

001: MEACCGAAVM SSLQQPVWVK GSAFPSKGVA GINVNSSRVK LCSVKPCRAT PTEWSLITER PTSSAPEGAG SSFEDYGLHE ADPDVRTIID KEKQRQFRSL
101: ELIASENFTS RAVMEAVGSC LTNKYSEGLP GKRYYGGNEY IDELETLCQE RALAAFSLDG KQWGVNVQPL SGSPANFAVY TAVLNPHDRI MGLDLPHGGH
201: LSHGFMTPKR RVSGTSIYFE SMPYRLDEST GILDYEMLEK TANLFRPKLI IAGASAYPRD FDYPRLRKIA DAVGAFLMMD MAHISGLVAA SVLANPFEYC
301: DIVTTTTHKS LRGPRGGMIF FKKDPVLGMD LESAINNAVF PGLQGGPHNH TIGGLAVCLK HAKSPEFKVY QNQVVANCRA LASRLMELGY KLVSGGSDNH
401: LVLVDLRPMG IDGARVEKIL DMASITLNKN SVPGDKSALV PGGIRIGSPA MTTRGFTEKE FVSVADFIHE GVQITLEAKK SVSTTKLQDF MKVVTSPDFS
501: LMDKVLDLQK RVEALTSQYP LPGL

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.