Factsheet for Solyc12g098490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, nucleus

Predictor Summary:

cytosol 3
mitochondrion 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011868	Potato	cytosol	99.15	99.15
Solyc05g053810.2.1	Tomato	nucleus, plastid	93.84	93.84
VIT_05s0029g00310.t01	Wine grape	cytosol	90.02	90.02
CDY69223	Canola	cytosol	88.53	88.53
Bra032749.1-P	Field mustard	cytosol	88.32	88.32
CDY01173	Canola	cytosol	81.1	88.02
CDY50421	Canola	cytosol	81.1	88.02
Bra014001.1-P	Field mustard	cytosol	80.89	87.79
CDY47310	Canola	cytosol	80.89	87.79
GSMUA_Achr6P06520_001	Banana	cytosol	82.8	87.64
GSMUA_Achr8P00310_001	Banana	cytosol	46.71	87.3
AT4G13930.1	Thale cress	cytosol	87.26	87.26
KRH58850	Soybean	cytosol	88.32	86.85
GSMUA_Achr9P01620_001	Banana	cytosol	80.68	86.76
GSMUA_Achr9P07310_001	Banana	cytosol	72.82	84.69
EES08452	Sorghum	cytosol	84.29	84.29
Os11t0455800-01	Rice	plasma membrane	83.86	83.86
TraesCS2D01G493600.1	Wheat	cytosol	83.44	83.44
TraesCS2A01G493700.1	Wheat	plastid	83.44	83.44
TraesCS2B01G521700.1	Wheat	cytosol	83.23	83.23
Zm00001d040457_P001	Maize	mitochondrion	16.99	82.47
AT4G13890.1	Thale cress	cytosol	77.71	77.87
Zm00001d049234_P001	Maize	plastid	84.71	75.86
KRH42751	Soybean	endoplasmic reticulum, nucleus	90.66	74.65
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	83.01	70.96
Solyc04g076790.2.1	Tomato	nucleus	57.96	52.8
Solyc02g091560.2.1	Tomato	plastid	57.96	52.7
Solyc08g065490.2.1	Tomato	nucleus, plastid	57.54	51.72
Solyc12g095930.1.1	Tomato	plastid	56.9	50.85
Solyc01g104000.2.1	Tomato	plastid	62.42	49.49

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4DHM2	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc12g098490.1	EnsemblPlants:Solyc12g098490.1.1	UniParc:UPI000276A1FA	SEG:seg

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:K4DHM2]

Coordinates

chr12:-:65982944..65985837

Molecular Weight (calculated)

52279.4 Da

IEP (calculated)

7.593

GRAVY (calculated)

-0.377

Length

471 amino acids

Sequence
(BLAST)

001: MDPVSVWGNE PLNTTDPEIF DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEYIDQIEN LTRSRALQAF HLDPTKWGVN
101: VQPYSGSPAN FAAYTAVLNP HDRIMGLDLP SGGHLTHGYY TSGGKKVSAT SIYFESLPYK LDFTTGYIDY DRLDEKAMDF RPKLLICGGS AYPRDWDYKR
201: FREVADKCGA LLLCDMAHIS GLVAAQEAAN PFEYCDLVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPED AVYDFEDKIN FSVFPSLQGG PHNHQIGALA
301: VALKQSMTPG FKAYAKQVKA NAVALGKFLM SKDYKLVTSG TENHLVLWDL RPLGLTGNKV EKLCDLANIT VNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: LEKDFEQIGE FLHRAVTITL NIQKEHGKLF KDFNKGLVNN KEIEELKADV EKFASSFDMP GFKMSEMKYK D

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.