CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92643
CDY03441
CDY11021
CDY34291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	CDX92643	AT4G24560.1	23232097
AT4G13930.1	CDY03441	AT4G24560.1	23232097
AT4G13930.1	CDY11021	AT4G24560.1	23232097
AT4G13930.1	CDY34291	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47310	Canola	cytosol	91.3	99.08
CDY50421	Canola	cytosol	91.08	98.85
CDY01173	Canola	cytosol	91.08	98.85
Bra032749.1-P	Field mustard	cytosol	98.51	98.51
AT4G13930.1	Thale cress	cytosol	93.42	93.42
Zm00001d040457_P001	Maize	mitochondrion	18.68	90.72
Solyc05g053810.2.1	Tomato	nucleus, plastid	90.23	90.23
PGSC0003DMT400040717	Potato	cytosol	90.23	90.23
VIT_05s0029g00310.t01	Wine grape	cytosol	89.38	89.38
PGSC0003DMT400011868	Potato	cytosol	88.75	88.75
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	88.53	88.53
KRH58850	Soybean	cytosol	89.17	87.68
GSMUA_Achr6P06520_001	Banana	cytosol	82.17	86.97
GSMUA_Achr9P01620_001	Banana	cytosol	80.68	86.76
GSMUA_Achr8P00310_001	Banana	cytosol	46.28	86.51
Os11t0455800-01	Rice	plasma membrane	85.56	85.56
EES08452	Sorghum	cytosol	85.56	85.56
GSMUA_Achr9P07310_001	Banana	cytosol	73.46	85.43
TraesCS2D01G493600.1	Wheat	cytosol	84.93	84.93
TraesCS2A01G493700.1	Wheat	plastid	84.93	84.93
TraesCS2B01G521700.1	Wheat	cytosol	84.71	84.71
Zm00001d049234_P001	Maize	plastid	85.56	76.62
KRH42751	Soybean	endoplasmic reticulum, nucleus	90.66	74.65
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	84.29	72.05
CDX90395	Canola	cytosol	41.83	56.29
CDY49684	Canola	mitochondrion	59.66	54.35
CDX75685	Canola	mitochondrion	59.45	54.16
CDX69344	Canola	mitochondrion	59.24	53.97
CDY49212	Canola	mitochondrion	57.32	53.05
CDX96315	Canola	mitochondrion	57.54	52.72
CDY38837	Canola	cytosol	61.57	51.51
CDX91734	Canola	cytosol	63.91	51.1
CDY41499	Canola	cytosol	61.57	50.79
CDX72795	Canola	mitochondrion	57.11	50.75
CDY41886	Canola	cytosol	63.27	50.51
CDY30643	Canola	cytosol	61.57	50.09
CDY04695	Canola	cytosol	61.36	49.23
CDY39889	Canola	plastid	58.17	47.24
CDY23328	Canola	golgi, plasma membrane	58.17	44.19
CDY53135	Canola	cytosol	10.83	37.5
CDY47659	Canola	cytosol	10.83	37.5
CDX68316	Canola	mitochondrion	57.32	23.08

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:A0A078JNV3	UniProt:A0A078JNV3	EnsemblPlants:CDY69223
ProteinID:CDY69223	ProteinID:CDY69223.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00084232001	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF11	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661
MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EC5589
SEG:seg	:	:	:	:	:

Description

BnaCnng62500DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078JNV3]

Coordinates

chrLK038901:+:1477..3765

Molecular Weight (calculated)

51698.8 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.273

Length

471 amino acids

Sequence
(BLAST)

001: MDPVSSWGNT PLVTVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GNEFIDQIEN LCQSRALQAF RLDSASWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKAMDF RPKLLICGGS AYPRDWDYAR
201: LRAVADKVGA LLLCDMAHIS GLVAAQEAAN PFDYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALANYLM GKGYSIVTGG TENHLVLWDL RPLGLTGNKV EKLCDLCNIT LNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFEKIGE FLSRSVTLTL NIQKEHGKLL KDFNKGLVNN KEIEELKADV EKFSASYEMP GFLMSEMKYQ D

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.