Factsheet for HORVU2Hr1G110110.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G069620.20
HORVU7Hr1G064340.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	HORVU5Hr1G069620.20	AT4G24560.1	23232097
AT4G13930.1	HORVU7Hr1G064340.3	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G493700.1	Wheat	plastid	84.75	99.15
TraesCS2D01G493600.1	Wheat	cytosol	84.75	99.15
TraesCS2B01G521700.1	Wheat	cytosol	84.57	98.94
Os11t0455800-01	Rice	plasma membrane	81.31	95.12
EES08452	Sorghum	cytosol	78.58	91.93
Zm00001d040457_P001	Maize	mitochondrion	15.61	88.66
GSMUA_Achr8P00310_001	Banana	cytosol	40.29	88.1
GSMUA_Achr6P06520_001	Banana	cytosol	70.24	86.97
Zm00001d049234_P001	Maize	plastid	82.03	85.93
GSMUA_Achr9P01620_001	Banana	cytosol	68.24	85.84
VIT_05s0029g00310.t01	Wine grape	cytosol	72.78	85.14
GSMUA_Achr9P07310_001	Banana	cytosol	62.43	84.94
Solyc05g053810.2.1	Tomato	nucleus, plastid	72.23	84.5
Bra032749.1-P	Field mustard	cytosol	72.05	84.29
CDY69223	Canola	cytosol	72.05	84.29
AT4G13930.1	Thale cress	cytosol	71.87	84.08
PGSC0003DMT400040717	Potato	cytosol	71.87	84.08
PGSC0003DMT400011868	Potato	cytosol	71.51	83.65
CDY50421	Canola	cytosol	65.88	83.64
CDY01173	Canola	cytosol	65.88	83.64
HORVU1Hr1G055860.2	Barley	plasma membrane	71.32	83.44
CDY47310	Canola	cytosol	65.7	83.41
Bra014001.1-P	Field mustard	cytosol	65.7	83.41
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	70.96	83.01
KRH58850	Soybean	cytosol	70.05	80.58
AT4G13890.1	Thale cress	cytosol	63.88	74.89
KRH42751	Soybean	endoplasmic reticulum, nucleus	73.14	70.45
HORVU4Hr1G011500.1	Barley	plasma membrane	49.55	51.22
HORVU3Hr1G082070.2	Barley	cytosol	54.45	51.11

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	UniProt:A0A287JEY2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999
EnsemblPlantsGene:HORVU2Hr1G110110	EnsemblPlants:HORVU2Hr1G110110.2	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464
ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI000B46C8F6	SEG:seg	:

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A287JEY2]

Coordinates

chrchr2H:-:718880567..718884299

Molecular Weight (calculated)

59840.6 Da

IEP (calculated)

8.639

GRAVY (calculated)

-0.305

Length

551 amino acids

Sequence
(BLAST)

001: RCGGPTLPPR PWPKHPAPHP HQPPTARIRS NTSAAPTTTA THLPSAHAPH SYISPRPPIA TTRRPPPSPS PLPPPSADAA MDSVASWGLT PLADADPDVF
101: DLIEREKRRQ RSGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGARYYG GNDVIDEIEN LCRDRALAAF RLDAASWGVN VQPYSGSPAN FAAYTALLNP
201: HDRIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFESLPYK VSAANGYIDY DKLEEKAMDF RPKLIICGGS AYPRDWDYAK LRAIADKIGA MLLCDMAHIS
301: GLVAAQEAAN PFEFCDVVTT TTHKSLRGPR AGMIFYRKGP KPAKKGQPEG AVYDYEDKIN FAVFPSLQGG PHNHQIAALA VALKQTLTPG FKAYAKQVKA
401: NAVAVGKYLM SKGYKMVTDG TDNHLVLWDL RPLGLTGNKV EKMCDLCSIT LNKNAVFGDS SALSPGGVRI GAPAMTSRGL VEKDFEQIAE FLHQAVTICL
501: NIQKEHGKLL KDFSKGLVNN KDIENLKVEV EKFALSFDMP GFTLESMKYK E

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.