Factsheet for Bra014001.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013814.1-P
Bra019219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	Bra013814.1-P	AT4G24560.1	23232097
AT4G13930.1	Bra019219.1-P	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47310	Canola	cytosol	100.0	100.0
Bra022129.1-P	Field mustard	cytosol	32.72	100.0
Zm00001d040457_P001	Maize	mitochondrion	20.28	90.72
Bra032749.1-P	Field mustard	cytosol	98.39	90.66
AT4G13930.1	Thale cress	cytosol	92.86	85.56
PGSC0003DMT400040717	Potato	cytosol	90.09	83.01
Solyc05g053810.2.1	Tomato	nucleus, plastid	89.86	82.8
GSMUA_Achr9P01620_001	Banana	cytosol	82.95	82.19
VIT_05s0029g00310.t01	Wine grape	cytosol	88.71	81.74
PGSC0003DMT400011868	Potato	cytosol	88.02	81.1
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	87.79	80.89
KRH58850	Soybean	cytosol	88.25	79.96
GSMUA_Achr6P06520_001	Banana	cytosol	80.88	78.88
EES08452	Sorghum	cytosol	84.56	77.92
Os11t0455800-01	Rice	plasma membrane	84.56	77.92
TraesCS2A01G493700.1	Wheat	plastid	84.1	77.49
TraesCS2D01G493600.1	Wheat	cytosol	84.1	77.49
TraesCS2B01G521700.1	Wheat	cytosol	83.87	77.28
GSMUA_Achr9P07310_001	Banana	cytosol	71.66	76.79
GSMUA_Achr8P00310_001	Banana	cytosol	41.94	72.22
Zm00001d049234_P001	Maize	plastid	84.56	69.77
KRH42751	Soybean	endoplasmic reticulum, nucleus	89.86	68.18
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	83.41	65.7
Bra011796.1-P	Field mustard	mitochondrion	58.76	49.32
Bra040080.1-P	Field mustard	plastid	59.68	48.96
Bra010622.1-P	Field mustard	mitochondrion	58.29	48.94
Bra016147.1-P	Field mustard	mitochondrion	57.37	47.61
Bra036774.1-P	Field mustard	cytosol	63.82	46.95
Bra016392.1-P	Field mustard	cytosol	62.21	46.71
Bra031358.1-P	Field mustard	cytosol	61.52	45.8
Bra003928.1-P	Field mustard	mitochondrion	57.37	22.37

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.40.640.10
Gene3D:3.90.1150.10	MapMan:50.2.1	EnsemblPlantsGene:Bra014001	EnsemblPlants:Bra014001.1	EnsemblPlants:Bra014001.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4DBY9	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002546EB1	:

Description

AT4G13930 (E=9e-141) SHM4 | SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA08:+:4720697..4722394

Molecular Weight (calculated)

47574.8 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.243

Length

434 amino acids

Sequence
(BLAST)

001: MDPVSSWGNT PLVTVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GNEFIDQIEN LCQSRALEAF RLESASWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKAMDF RPKLLICGGS AYPRDWDYAR
201: LRAVADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGGPHNHQIG ALAVALKQAN TPAFKVYAKQ VKANAVALAN YLMGKGYSIV
301: TGGTENHLVL WDLRPLGLTG NKVEKLCDLC NITLNKNAVF GDSSALAPGG VRIGTPAMTS RGLVEKDFEK IGEFLSRSVT LTLNIQKEHG KLLKDFNKGL
401: VNNKEIEELK ADVEKFSASY EMPGFLMSEM KYQD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.