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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014001.1-P Field mustard cytosol 100.0 32.72
Bra032749.1-P Field mustard cytosol 97.89 29.51
Bra011796.1-P Field mustard mitochondrion 47.89 13.15
Bra010622.1-P Field mustard mitochondrion 47.18 12.96
Bra036774.1-P Field mustard cytosol 52.11 12.54
Bra040080.1-P Field mustard plastid 45.77 12.29
Bra016147.1-P Field mustard mitochondrion 42.96 11.66
Bra016392.1-P Field mustard cytosol 46.48 11.42
Bra031358.1-P Field mustard cytosol 45.77 11.15
Bra003928.1-P Field mustard mitochondrion 43.66 5.57
Protein Annotations
EnsemblPlants:Bra022129.1EnsemblPlants:Bra022129.1-PEnsemblPlantsGene:Bra022129Gene3D:3.90.1150.10GO:GO:0003674GO:GO:0003824
InterPro:IPR015422InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1PANTHER:PTHR11680PANTHER:PTHR11680:SF11PFAM:PF00464
SUPFAM:SSF53383UniParc:UPI00025462F9UniProt:M4E032MapMan:35.1::
Description
AT4G13930 (E=8e-071) SHM4 | SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding
Coordinates
chrA02:+:19577976..19578560
Molecular Weight (calculated)
15642.9 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.273
Length
142 amino acids
Sequence
(BLAST)
001: MGKGYSIVTG GTENHLVLWD LRPLGLTGNK VEKLCDLCNI TLNKNAVFGD SSALAPGGVR IGTPAMTSRG LVEKDFEKIG EFLSRSVTLT LNIQKEHGKL
101: LKDFNKGLVN NKEIEELKAD VEKFSASYEM PGFLMSEMKY QD
Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)
001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE
Arabidopsis Description
SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.