Factsheet for Bra031358.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30643	Canola	cytosol	97.94	98.62
AT1G22020.1	Thale cress	cytosol	88.85	86.48
Bra016392.1-P	Field mustard	cytosol	85.25	85.99
Bra036774.1-P	Field mustard	cytosol	71.18	70.34
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.98	69.86
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	64.15	68.25
TraesCS3B01G417800.1	Wheat	cytosol	60.03	67.96
KRH64759	Soybean	cytosol, peroxisome	11.84	66.35
GSMUA_Achr6P17750_001	Banana	cytosol	64.32	65.56
Zm00001d012247_P001	Maize	cytosol	63.29	63.08
Os05t0429000-01	Rice	cytosol	63.12	62.69
TraesCS3D01G378700.1	Wheat	cytosol	62.61	62.61
TraesCS3A01G385600.1	Wheat	cytosol	62.78	62.56
HORVU3Hr1G082070.2	Barley	cytosol	62.78	62.35
Zm00001d042661_P001	Maize	cytosol	62.78	62.24
EES01843	Sorghum	cytosol	63.29	62.23
Os01t0874900-01	Rice	extracellular	63.64	61.83
Bra014001.1-P	Field mustard	cytosol	45.8	61.52
GSMUA_Achr10P...	Banana	cytosol	60.38	61.22
Bra032749.1-P	Field mustard	cytosol	49.4	61.15
KRH64758	Soybean	cytosol	52.14	61.04
Bra010622.1-P	Field mustard	mitochondrion	43.4	48.94
Bra011796.1-P	Field mustard	mitochondrion	42.88	48.36
Bra016147.1-P	Field mustard	mitochondrion	42.88	47.8
GSMUA_Achr10P...	Banana	vacuole	13.72	47.06
Bra040080.1-P	Field mustard	plastid	42.02	46.31
Bra022129.1-P	Field mustard	cytosol	11.15	45.77
Bra003928.1-P	Field mustard	mitochondrion	42.2	22.1

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EnsemblPlantsGene:Bra031358	EnsemblPlants:Bra031358.1	EnsemblPlants:Bra031358.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264
GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4ERD4	HAMAP:MF_00051
PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI00025475F4	SEG:seg

Description

AT1G22020 (E=5e-270) SHM6 | SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA05:-:15779121..15781488

Molecular Weight (calculated)

64812.1 Da

IEP (calculated)

7.202

GRAVY (calculated)

-0.391

Length

583 amino acids

Sequence
(BLAST)

001: MDRAAQSDLS LGFTSPHALP RIPIADDSIT LQIDSSFRPP SSNPMPPVPL QLLEQRFDAT GGSHRLHKDQ DFDDDDDDQR EEFILLGQPL KLKRSRGSTS
101: SMRSPSPCKR FAADPETRRA AVKAWGDQSL SEADPEIHDF MEKEKQRQFR GIELIASENF VCRAVMEALG SHLTNKYSEG IPGARYYTGN QYIDQIEILC
201: QERALQAFGL HPEHWGVNVQ PYSCTSANFA VFSGLLLPGE RIMGLDSPSG GHMSHGYYTP GGKKVSGASI FFESFPYKVD PRTGYIDYDK LEEKALDYRP
301: KILICGGSSY PRDWDFPRFR YVADKCGAVL MFDMAQISGL VAAKESPNPF DYCDIVTSTT HKSLRGPRGG IIFYRRGLKG KKQSINLNHC ETNIQYDFEE
401: KINFSVFPSL QGGPHNNHIA ALAIALKQAA SPEYKAYMRQ VKKNAKALAS ALISKNCKLV TNGTDNHLML WDLTPLGLTG KVYEKVCEMC HITVNKVAIF
501: SENGVISPGG VRIGSPAMTS RGCLESDFET MAEFLYRAAL IASAAQREQG KSLKSIYHCK DIADLRNQVE AFASQFAMPA FDM

Best Arabidopsis Sequence Match ( AT1G22020.2 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.