Factsheet for Os05t0429000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64759	Soybean	cytosol, peroxisome	13.29	75.0
Os01t0874900-01	Rice	extracellular	73.59	72.0
KRH26369	Soybean	cytosol	67.97	70.87
KRH44066	Soybean	plastid	67.12	69.61
VIT_12s0034g02380.t01	Wine grape	cytosol	66.95	68.11
GSMUA_Achr6P17750_001	Banana	cytosol	65.59	67.31
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	66.27	66.61
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	61.84	66.24
CDY38837	Canola	cytosol	62.35	65.01
GSMUA_Achr10P...	Banana	cytosol	63.37	64.7
CDY41499	Canola	cytosol	62.01	63.75
CDY30643	Canola	cytosol	62.86	63.73
CDY04695	Canola	cytosol	63.2	63.2
Bra016392.1-P	Field mustard	cytosol	62.18	63.15
PGSC0003DMT400061157	Potato	cytosol	63.88	63.13
Bra031358.1-P	Field mustard	cytosol	62.69	63.12
Solyc01g104000.2.1	Tomato	plastid	63.71	62.96
Os11t0455800-01	Rice	plasma membrane	49.91	62.21
Bra036774.1-P	Field mustard	cytosol	62.01	61.69
CDY41886	Canola	cytosol	61.84	61.53
CDX91734	Canola	cytosol	61.67	61.46
AT1G36370.1	Thale cress	plastid	62.52	61.37
AT1G22020.1	Thale cress	cytosol	62.01	60.77
Os12t0409000-01	Rice	plasma membrane	51.79	57.25
KRH64758	Soybean	cytosol	48.55	57.23
GSMUA_Achr10P...	Banana	vacuole	14.14	48.82
Os03t0738400-01	Rice	mitochondrion	42.08	48.15

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:4338868	ProteinID:AAS90670.1	ProteinID:AAV59418.1
EMBL:AK109617	ProteinID:BAF17529.1	ProteinID:BAS94140.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0005515	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259
GO:GO:0035999	InterPro:IPR001680	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	EnsemblPlantsGene:Os05g0429000
EnsemblPlants:Os05t0429000-01	PFAM:PF00464	ScanProsite:PS00096	ScanProsite:PS00678	PFscan:PS50082	PANTHER:PTHR11680
PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q75HP7	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI00003589E7	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	RefSeq:XP_015639962.1
SEG:seg	:	:	:	:	:

Description

serine hydroxymethyltransferase 5Similar to Hydroxymethyltransferase. (Os05t0429000-01)

Coordinates

chr5:-:21050904..21054702

Molecular Weight (calculated)

64350.8 Da

IEP (calculated)

7.603

GRAVY (calculated)

-0.345

Length

587 amino acids

Sequence
(BLAST)

001: MLDRATGGRR RAAGEGMDHR PDLSLALHPP PPPEGSSAAA AEEVGEEEAE GGEGRFSLMG QPLFLKRPRP RPPRPPRARG VGDDVDVDVD DDSSPCCSSS
101: CLSPAAKRRA AAGGLEARRA AVRAWGCQPL TEADPDVHEL MERERRRQAG GVELIASENY ACRAVLDALG SHLTNKYSEG LPGARYYCGN QHIDAIERLC
201: CDRALAAFGL DPSRWGVNVQ PYSCTSANFA VYTGLLLPND RIMGLDSPSG GHVSHGYYTP SGKKVSGASI FFENLSYRVN PHTGYIDYDK VEEKAVDFHP
301: KILICGASSY PRDWDYARMR LVADKCGAVL MCDMAQISGL VAAKECRNPF DYCDIVTSTT HKSLRGPRGG IIFFRKGKNL RKRVGSLTQV VENDQYDFED
401: RINFAVFPSM QGGPHNNHIA ALAIALKQVA MPEFKAYIQQ VKKNAQALAM ALLRRKCRLV TGGTDNHLML WDLRTFGLTG KNFEKVCEAC HISLNKTPIY
501: GDNGSISPGG VRIGTPAMTT RGCLESDFEI MAEFLLRAAH IASIVLKEHG RLQKDFLKGL ENNNDIIELR NQVETFALQF AMPGFDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.