Factsheet for GSMUA_Achr10P09850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P17750_001	Banana	cytosol	81.74	82.17
TraesCS3B01G417800.1	Wheat	cytosol	63.48	70.87
KRH26369	Soybean	cytosol	65.04	66.43
VIT_12s0034g02380.t01	Wine grape	cytosol	66.61	66.38
KRH64759	Soybean	cytosol, peroxisome	12.0	66.35
TraesCS3D01G378700.1	Wheat	cytosol	66.96	66.04
TraesCS3A01G385600.1	Wheat	cytosol	67.13	65.98
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	66.78	65.75
KRH44066	Soybean	plastid	64.52	65.55
HORVU3Hr1G082070.2	Barley	cytosol	66.78	65.42
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	61.22	64.23
Zm00001d012247_P001	Maize	cytosol	65.22	64.1
Zm00001d042661_P001	Maize	cytosol	65.22	63.78
EES01843	Sorghum	cytosol	65.74	63.74
Os01t0874900-01	Rice	extracellular	66.26	63.5
Os05t0429000-01	Rice	cytosol	64.7	63.37
AT1G36370.1	Thale cress	plastid	65.74	63.21
CDX91734	Canola	cytosol	64.7	63.16
Bra036774.1-P	Field mustard	cytosol	64.7	63.05
CDY41886	Canola	cytosol	64.7	63.05
Solyc01g104000.2.1	Tomato	plastid	64.35	62.29
PGSC0003DMT400061157	Potato	cytosol	64.35	62.29
CDY38837	Canola	cytosol	60.0	61.28
CDY30643	Canola	cytosol	61.22	60.79
CDY41499	Canola	cytosol	60.35	60.77
CDY04695	Canola	cytosol	61.91	60.65
Bra016392.1-P	Field mustard	cytosol	60.87	60.55
Bra031358.1-P	Field mustard	cytosol	61.22	60.38
GSMUA_Achr9P07310_001	Banana	cytosol	42.26	60.0
AT1G22020.1	Thale cress	cytosol	62.26	59.77
GSMUA_Achr6P06520_001	Banana	cytosol	44.52	57.53
GSMUA_Achr8P00310_001	Banana	cytosol	24.87	56.75
GSMUA_Achr9P01620_001	Banana	cytosol	42.96	56.39
KRH64758	Soybean	cytosol	48.17	55.62
GSMUA_Achr10P...	Banana	cytosol	35.65	53.95
GSMUA_Achr7P27360_001	Banana	mitochondrion	41.22	46.11
GSMUA_Achr6P23140_001	Banana	mitochondrion	40.87	45.19
GSMUA_Achr10P...	Banana	vacuole	13.22	44.71
GSMUA_Achr3P30760_001	Banana	mitochondrion	39.65	43.51

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.40.640.10
Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0005515	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSMUA_Achr10G09850_001
EnsemblPlants:GSMUA_Achr10P09850_001	EnsemblPlants:GSMUA_Achr10T09850_001	InterPro:IPR001680	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0RGW1
PFAM:PF00464	ScanProsite:PS00096	ScanProsite:PS00678	PFscan:PS50082	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI0002957BFD	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	SEG:seg	:	:

Description

Serine hydroxymethyltransferase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G09850_001]

Coordinates

chr10:+:19509944..19514967

Molecular Weight (calculated)

63959.3 Da

IEP (calculated)

6.815

GRAVY (calculated)

-0.322

Length

575 amino acids

Sequence
(BLAST)

001: MDLTNFESSL SLALHTDPSP SSQPSYRAPI ADDSVHLLRD AYLRDSLHNR PIPLQLLDQL AETGGFGYVD VDTNLGEESD EVEQEGKEVR ILGYSMCIKR
101: QRRWESPSSC SSSSVLPSKR TKVEPDLELR REYILSWGNQ PLSVADPDIF EIMEKERRRQ VLGIELVASE NFVCQGVLDA LGSHLTNKYS EGFPGARYYG
201: GNKYIDQIEW LCHDPNFAVY TGLLLPKDRI MGLDSPSGGH VSHGYNIPGG KKISGASIFF ESLSYKVNPL TGYIDYDKLE EKAIDYRPKI LICGGSSYPR
301: EWDYARFRLI ADKCGAILMC DMAHISGLVA AKECLSPFDY CDIVTSTTHK SLRGPRGGII FFRKGKIQKK QGVCLGRTDD HGRYDFEERI NFAVFPSLQG
401: GPHNNHIAAL AVALKQVATP EYTAYIRQVK RNAQTLASAL LRRNCKLVTG GTDNHLLVWD LRTFGLTGKN FEKVCEACHI SLNKTPIFGD NGTISPGGVR
501: IGTPAMTTRG CLEGDFEMIA DILLRAAHVA STIQKEHGKI QKEFQKGLES SRDVIELRNQ VESFAIQFAM PGCDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.