Factsheet for GSMUA_Achr6P17750_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	82.17	81.74
TraesCS3B01G417800.1	Wheat	cytosol	66.08	73.4
KRH64759	Soybean	cytosol, peroxisome	12.76	70.19
KRH26369	Soybean	cytosol	69.06	70.16
KRH44066	Soybean	plastid	68.71	69.43
VIT_12s0034g02380.t01	Wine grape	cytosol	69.76	69.15
TraesCS3D01G378700.1	Wheat	cytosol	69.93	68.61
TraesCS3A01G385600.1	Wheat	cytosol	70.1	68.55
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.23	67.81
HORVU3Hr1G082070.2	Barley	cytosol	69.58	67.8
Zm00001d012247_P001	Maize	cytosol	68.53	67.01
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	64.16	66.97
CDX91734	Canola	cytosol	68.71	66.72
CDY41886	Canola	cytosol	68.53	66.44
Bra036774.1-P	Field mustard	cytosol	68.53	66.44
Os01t0874900-01	Rice	extracellular	69.58	66.33
PGSC0003DMT400061157	Potato	cytosol	68.71	66.16
Zm00001d042661_P001	Maize	cytosol	68.01	66.16
AT1G36370.1	Thale cress	plastid	69.06	66.05
EES01843	Sorghum	cytosol	68.36	65.94
Os05t0429000-01	Rice	cytosol	67.31	65.59
Solyc01g104000.2.1	Tomato	plastid	68.01	65.49
CDY30643	Canola	cytosol	65.91	65.11
CDY38837	Canola	cytosol	63.81	64.83
CDY04695	Canola	cytosol	66.08	64.4
Bra031358.1-P	Field mustard	cytosol	65.56	64.32
CDY41499	Canola	cytosol	63.81	63.92
Bra016392.1-P	Field mustard	cytosol	64.34	63.67
AT1G22020.1	Thale cress	cytosol	65.91	62.94
GSMUA_Achr9P07310_001	Banana	cytosol	43.88	61.98
GSMUA_Achr6P06520_001	Banana	cytosol	45.8	58.88
GSMUA_Achr9P01620_001	Banana	cytosol	44.76	58.45
GSMUA_Achr8P00310_001	Banana	cytosol	25.7	58.33
KRH64758	Soybean	cytosol	50.17	57.63
GSMUA_Achr10P...	Banana	cytosol	35.49	53.42
GSMUA_Achr7P27360_001	Banana	mitochondrion	42.31	47.08
GSMUA_Achr10P...	Banana	vacuole	13.64	45.88
GSMUA_Achr6P23140_001	Banana	mitochondrion	41.61	45.77
GSMUA_Achr3P30760_001	Banana	mitochondrion	40.56	44.27

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.40.640.10
Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0005515	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSMUA_Achr6G17750_001
EnsemblPlants:GSMUA_Achr6P17750_001	EnsemblPlants:GSMUA_Achr6T17750_001	InterPro:IPR001680	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0T7X3
PFAM:PF00464	ScanProsite:PS00096	ScanProsite:PS00678	PFscan:PS50082	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI000294DB21	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	SEG:seg	:	:

Description

Serine hydroxymethyltransferase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17750_001]

Coordinates

chr6:-:11927877..11933793

Molecular Weight (calculated)

63561.3 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.465

Length

572 amino acids

Sequence
(BLAST)

001: MDHTHHQSNL SLGFHAVPLP PLTSRAPIAD DSISLQIDPG LRDPSHNPRP IPLQFFDQQP DSARDGSVGA NDGEESDEED QKEEEVRILG YSMCIKRQRR
101: GDSSSSCSSS SMLLSKRARV EPDLETRRDA VRSWGNQPLS AADPEIFEIM DKEKQRQVLG IELIASENFV CRGVLDALGS HLTNKYSEGY PGARYYGGNQ
201: YIDQIERLCH DPNFAVYTGL LLPKDRIMGL DSPSGGHVSH GYYTPSGKKI SAASIFFESL SYKVNPLTGY IDYDKLEEKA MDYRPKILIC GGSTYPREWD
301: YARVRQIADK CGAVLMCDMA HISGLVAAKE SLSPFDYCDI VTSTTHKSLR GPRGGIIFFR KGKKQKRQGF CLGQTDENDR YDFEERINFA VFPSLQGGPH
401: DNHIAALAIA LKQVATPEYK AYIQQVKRNA QALASALLRR NCRLVTGGTD NHLLLWDLRT FGLTGKNFEK VCEACHISLN KTPIFGDNGA ISPGGVRIGT
501: PAMTTRGCLE GDFEMIAEFL LRAAQIASTI QKEHGKIQKE FLKGLESSRD VAELRNRVES FASQYAMPGY DV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.