Factsheet for TraesCS3D01G378700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G385600.1	Wheat	cytosol	99.31	98.97
TraesCS3B01G417800.1	Wheat	cytosol	86.96	98.45
HORVU3Hr1G082070.2	Barley	cytosol	97.26	96.59
Zm00001d012247_P001	Maize	cytosol	89.19	88.89
Zm00001d042661_P001	Maize	cytosol	89.02	88.27
EES01843	Sorghum	cytosol	89.37	87.86
Os01t0874900-01	Rice	extracellular	90.05	87.5
KRH26369	Soybean	cytosol	70.67	73.18
KRH44066	Soybean	plastid	69.64	71.73
KRH64759	Soybean	cytosol, peroxisome	12.69	71.15
VIT_12s0034g02380.t01	Wine grape	cytosol	70.33	71.06
GSMUA_Achr6P17750_001	Banana	cytosol	68.61	69.93
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	68.27	68.15
PGSC0003DMT400061157	Potato	cytosol	68.44	67.17
GSMUA_Achr10P...	Banana	cytosol	66.04	66.96
Solyc01g104000.2.1	Tomato	plastid	67.92	66.67
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	62.61	66.61
AT1G36370.1	Thale cress	plastid	67.24	65.55
CDY38837	Canola	cytosol	63.12	65.36
Bra036774.1-P	Field mustard	cytosol	65.52	64.75
CDX91734	Canola	cytosol	65.35	64.69
CDY41886	Canola	cytosol	65.35	64.58
CDY41499	Canola	cytosol	62.61	63.92
CDY30643	Canola	cytosol	62.61	63.04
Bra016392.1-P	Field mustard	cytosol	62.44	62.98
TraesCS2D01G493600.1	Wheat	cytosol	50.77	62.84
Bra031358.1-P	Field mustard	cytosol	62.61	62.61
CDY04695	Canola	cytosol	62.44	62.01
AT1G22020.1	Thale cress	cytosol	62.95	61.27
KRH64758	Soybean	cytosol	49.57	58.03
TraesCS1D01G220400.1	Wheat	golgi	52.49	57.41
GSMUA_Achr10P...	Banana	vacuole	15.09	51.76
TraesCS4D01G068100.1	Wheat	mitochondrion	43.57	49.8

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR001680	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00678	PFscan:PS50082	PANTHER:PTHR11680
PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
EnsemblPlantsGene:TraesCS3D01G378700	EnsemblPlants:TraesCS3D01G378700.1	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	TIGR:cd00378	SEG:seg

Description

No Description!

Coordinates

chr3D:+:495916289..495919676

Molecular Weight (calculated)

63366.0 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.362

Length

583 amino acids

Sequence
(BLAST)

001: MDLSRPESSD LSLGLHPHAH ARVHARAATP LRLFDDSDDV KTEGSVGGGG DGEDGDDEGA DQHFSLLGHS LCVKRPRRGL YGGGGGGETS SCSSSSAAAL
101: RPAKRQASGA DLEARRGAVR AWGNQPLAEA DPDVHALMER ERERQVRGIE LIASENFVCR AVLDALGSHL TNKYSEGHPG ARYYGGNQHI DAIERLCHER
201: ACTAFGLDPA CWGVNVQPYS CTSANLAVYT GLLLPNDRIM GLEPPSGGHV SHGYYTPSGK KVSGASIFFE SLSYKVNPQT GYIDYDKLED RAMDFHPKIL
301: ICGGSSYPRE WDFARMRLIA DKCGAVLMCD MAHISGLVAA KECRSPFDYC DVVTSTTHKN LRGPRGGIIF FRKGKNMRKR GGSFSQGDEN DYDFEDKINF
401: AVFPSLQGGP HNNHIAALAI TLKQVATPEY KAYIQQVKKN AQALASALLR RKCRLVTGGT DNHLVLWDLR TFGLTGKNFE KVCELCHISI NKTPIYGDNG
501: SISPGGVRIG TPAMTTRGCL EDDFEVIADF LIRATQIAGS VLKQHGKVQK EFLRGLENNK DIIELGNLVE AFASQFAMPG FDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.