CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036774.1-P	Field mustard	cytosol	99.15	99.15
CDX91734	Canola	cytosol	98.31	98.47
AT1G36370.1	Thale cress	plastid	90.68	89.46
CDY30643	Canola	cytosol	70.68	72.02
CDY04695	Canola	cytosol	71.02	71.38
CDY38837	Canola	cytosol	67.97	71.23
TraesCS3B01G417800.1	Wheat	cytosol	62.03	71.07
CDY41499	Canola	cytosol	68.47	70.75
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.66	70.38
KRH64759	Soybean	cytosol, peroxisome	12.37	70.19
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	63.73	68.61
GSMUA_Achr6P17750_001	Banana	cytosol	66.44	68.53
TraesCS3D01G378700.1	Wheat	cytosol	64.58	65.35
TraesCS3A01G385600.1	Wheat	cytosol	64.58	65.13
HORVU3Hr1G082070.2	Barley	cytosol	64.41	64.74
GSMUA_Achr10P...	Banana	cytosol	63.05	64.7
Zm00001d012247_P001	Maize	cytosol	63.73	64.27
Os01t0874900-01	Rice	extracellular	64.92	63.83
CDY47310	Canola	cytosol	46.78	63.59
CDY01173	Canola	cytosol	46.78	63.59
CDY50421	Canola	cytosol	46.78	63.59
Zm00001d042661_P001	Maize	cytosol	63.22	63.44
EES01843	Sorghum	cytosol	63.73	63.41
CDY69223	Canola	cytosol	50.51	63.27
Os05t0429000-01	Rice	cytosol	61.53	61.84
KRH64758	Soybean	cytosol	50.85	60.24
CDY53135	Canola	cytosol	12.88	55.88
CDY47659	Canola	cytosol	12.88	55.88
CDY49212	Canola	mitochondrion	42.2	48.92
CDY49684	Canola	mitochondrion	42.37	48.36
CDX96315	Canola	mitochondrion	42.03	48.25
GSMUA_Achr10P...	Banana	vacuole	13.9	48.24
CDX69344	Canola	mitochondrion	42.2	48.16
CDX90395	Canola	cytosol	28.47	48.0
CDX75685	Canola	mitochondrion	42.03	47.97
CDX72795	Canola	mitochondrion	41.86	46.6
CDY39889	Canola	plastid	41.53	42.24
CDY23328	Canola	golgi, plasma membrane	41.53	39.52
CDX68316	Canola	mitochondrion	42.37	21.37

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:A0A078HVX9	UniProt:A0A078HVX9	EnsemblPlants:CDY41886
ProteinID:CDY41886	ProteinID:CDY41886.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00073860001	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7
MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1
MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EF06E0	SEG:seg

Description

BnaA08g06130DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078HVX9]

Coordinates

chrLK032509:-:274644..277099

Molecular Weight (calculated)

65095.9 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.342

Length

590 amino acids

Sequence
(BLAST)

001: MDLSGSDSNV SLGIGCSHAS SSSMAPTPRI PIADDSINLQ VDPSFRSSPV SFPPIPLQLL EQKVAAVEEP KKDGDEKEDE HFRILGHHMC LKRQRDCPLL
101: LAQSKHPRRT IAGDTDLESR RAAVRAWGDQ SLHLADPDIH EIMEKEKQRQ VKGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT GNQYIDQIEN
201: LCIARALAAF GLEPDKWGVN VQPYSCTSAN FAVYTALLLP GERIMGLDSP SGGHMSHGYC TPAGKKISAT SIFFESFPYK VNPQTGYIDY DKLEDKALDY
301: RPKILICGGS SYPRDWDFPR VRQIADKCGA VLMCDMAHIS GLVATKECSN PFDHCDIVTS TTHKGLRGPR GGIIFYRRGP KIRKQAHHSS HCDSSTHYDL
401: EEKINFAVFP SLQGGPHNNH IAALAIALKQ VATPEYKAYV QQMKKNAQAL ASALLRRKCR LVTGGTDNHL LLWDLTPLGL TGKVYEKVCE MCHITLNKTA
501: IFGDNGTISP GGVRIGTPAM TTRGCVESDF ETIADFLMKA AQITSALQRE HGKSHKEFVK SLCSNKDICD LRNRVEAFAL QYEMPAASQI

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.