CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92643
CDY03441
CDY11021
CDY34291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37930.1	CDX92643	AT4G24560.1	23232097
AT4G37930.1	CDY03441	AT4G24560.1	23232097
AT4G37930.1	CDY11021	AT4G24560.1	23232097
AT4G37930.1	CDY34291	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90395	Canola	cytosol	67.7	100.0
Bra010622.1-P	Field mustard	mitochondrion	99.03	99.03
AT4G37930.1	Thale cress	mitochondrion	98.07	98.07
CDX69344	Canola	mitochondrion	98.07	98.07
CDX75685	Canola	mitochondrion	98.07	98.07
Os03t0738400-01	Rice	mitochondrion	87.04	87.72
TraesCS4D01G068100.1	Wheat	mitochondrion	85.88	87.06
TraesCS4A01G246100.1	Wheat	mitochondrion	85.88	87.06
TraesCS4B01G069300.1	Wheat	mitochondrion	85.88	87.06
OQU91027	Sorghum	mitochondrion	85.11	85.77
CDY49212	Canola	mitochondrion	82.98	84.28
CDX96315	Canola	mitochondrion	83.75	84.24
HORVU4Hr1G011500.1	Barley	plasma membrane	86.07	83.49
CDX72795	Canola	mitochondrion	83.95	81.89
CDY69223	Canola	cytosol	54.35	59.66
CDY01173	Canola	cytosol	49.32	58.76
CDY50421	Canola	cytosol	49.32	58.76
CDY47310	Canola	cytosol	49.32	58.76
Zm00001d009738_P001	Maize	cytosol, plastid	20.7	49.31
CDY39889	Canola	plastid	53.77	47.93
CDY23328	Canola	golgi, plasma membrane	54.16	45.16
CDY30643	Canola	cytosol	48.94	43.7
CDY41499	Canola	cytosol	47.97	43.43
CDY38837	Canola	cytosol	46.81	42.98
CDY04695	Canola	cytosol	48.55	42.76
CDY41886	Canola	cytosol	48.36	42.37
CDX91734	Canola	cytosol	48.16	42.27
CDX68316	Canola	mitochondrion	83.56	36.92
CDY47659	Canola	cytosol	7.93	30.15
CDY53135	Canola	cytosol	7.93	30.15

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078IJU5	UniProt:A0A078IJU5	EnsemblPlants:CDY49684	ProteinID:CDY49684
ProteinID:CDY49684.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00093575001	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12
MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1
MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EDB827	:

Description

BnaC03g61150DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078IJU5]

Coordinates

chrLK032852:-:110340..113486

Molecular Weight (calculated)

57294.8 Da

IEP (calculated)

8.598

GRAVY (calculated)

-0.325

Length

517 amino acids

Sequence
(BLAST)

001: MAMAMALRRL SSSVDKPIRP LIRSTTCYMS SLPSEAVDDK ERSRVTWPKK LNASLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFDYADVV TTTTHKSLRG PRGAMIFYRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MEKGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTLA LKVKSEAQGT KLKDFVSAME ASSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.