CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47659	Canola	cytosol	100.0	100.0
CDX91734	Canola	cytosol	55.88	12.9
CDY41886	Canola	cytosol	55.88	12.88
CDX90395	Canola	cytosol	30.15	11.71
CDY50421	Canola	cytosol	36.76	11.52
CDY47310	Canola	cytosol	36.76	11.52
CDY01173	Canola	cytosol	36.76	11.52
CDY38837	Canola	cytosol	46.32	11.19
CDY41499	Canola	cytosol	46.32	11.03
CDY69223	Canola	cytosol	37.5	10.83
CDY30643	Canola	cytosol	44.12	10.36
CDY04695	Canola	cytosol	44.12	10.22
CDX96315	Canola	mitochondrion	30.15	7.98
CDY49684	Canola	mitochondrion	30.15	7.93
CDX75685	Canola	mitochondrion	29.41	7.74
CDX69344	Canola	mitochondrion	29.41	7.74
CDY49212	Canola	mitochondrion	28.68	7.66
CDY39889	Canola	plastid	31.62	7.41
CDX72795	Canola	mitochondrion	28.68	7.36
CDY23328	Canola	golgi, plasma membrane	30.88	6.77
CDX68316	Canola	mitochondrion	28.68	3.33

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.90.1150.10
MapMan:35.1	GO:A0A078IE59	UniProt:A0A078IE59	ProteinID:CDY47659.1	EnsemblPlants:CDY53135	ProteinID:CDY53135
ProteinID:CDY53135.1	GO:GO:0003674	GO:GO:0003824	EnsemblPlantsGene:GSBRNA2T00008667001	InterPro:IPR015422	PFAM:PF00464
PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201
MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
SUPFAM:SSF53383	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EE3BE5	SEG:seg	:

Description

BnaC01g41450DBnaC01g41450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE59]

Coordinates

chrLK033169:+:58527..59685

Molecular Weight (calculated)

15131.2 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.357

Length

136 amino acids

Sequence
(BLAST)

001: MQAGGGIDNH LLLWDLTPLG LTGKVYDKVC EMCHITLNKT AIFGDNGTPA MTTRGCIESD FETIVDFLRK AAHITRKFGK PHKELCYEMH ASSYHRYIAA
101: AQQGAKTNHR SIVYAVNEAY SAVKENMARG NQVKRA

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.