CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97692
CDY20141
CDY21857
CDY23328
CDY30094
CDY39889

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	CDX97692	AT3G15660.1	21798944
AT4G32520.1	CDY20141	AT3G15660.1	21798944
AT4G32520.1	CDY21857	AT3G15660.1	21798944
AT4G32520.1	CDY30094	AT3G15660.1	21798944
AT4G32520.1	CDY23328	AT4G32520.1	21798944
AT4G32520.1	CDY39889	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23328	Canola	golgi, plasma membrane	97.59	91.29
AT4G32520.1	Thale cress	plastid	81.55	89.41
GSMUA_Achr10P...	Banana	cytosol	55.34	84.47
KRH11116	Soybean	cytosol	33.45	79.51
VIT_04s0008g00770.t01	Wine grape	plastid	71.03	78.03
Solyc12g095930.1.1	Tomato	plastid	70.69	77.8
Solyc08g065490.2.1	Tomato	nucleus, plastid	69.66	77.1
KRH21130	Soybean	plastid	67.93	73.51
KRH26204	Soybean	cytosol	24.66	71.86
KRH07754	Soybean	cytosol, nucleus, peroxisome	25.86	69.44
KRH11117	Soybean	plastid	25.69	65.64
PGSC0003DMT400002684	Potato	plastid	22.76	62.56
CDY01173	Canola	cytosol	44.66	59.68
CDY50421	Canola	cytosol	44.66	59.68
CDY47310	Canola	cytosol	44.48	59.45
CDY69223	Canola	cytosol	47.24	58.17
CDY49212	Canola	mitochondrion	48.1	54.81
CDX75685	Canola	mitochondrion	48.62	54.55
CDX69344	Canola	mitochondrion	48.45	54.35
CDX90395	Canola	cytosol	32.76	54.29
CDX96315	Canola	mitochondrion	48.1	54.28
CDY49684	Canola	mitochondrion	47.93	53.77
CDX72795	Canola	mitochondrion	48.28	52.83
CDY38837	Canola	cytosol	41.38	42.63
CDY41499	Canola	cytosol	41.72	42.38
CDY30643	Canola	cytosol	41.72	41.8
CDX91734	Canola	cytosol	42.24	41.6
CDY04695	Canola	cytosol	42.07	41.57
CDY41886	Canola	cytosol	42.24	41.53
CDY47659	Canola	cytosol	7.41	31.62
CDY53135	Canola	cytosol	7.41	31.62
CDX68316	Canola	mitochondrion	51.03	25.3

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078HRG0	UniProt:A0A078HRG0	EnsemblPlants:CDY39889	ProteinID:CDY39889
ProteinID:CDY39889.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00068732001	InterPro:IPR015421	InterPro:IPR015422
HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	MetaCyc:PWY-1622
MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841
MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EEFD8D	SEG:seg	:

Description

BnaC03g67280DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078HRG0]

Coordinates

chrLK032459:-:269280..272245

Molecular Weight (calculated)

63783.8 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.134

Length

580 amino acids

Sequence
(BLAST)

001: MYVYVVTHTI CYSVYFTYSS SFSDSLPSPL LSDLVSQSSK LFLPYRSREK MQACCGGTSM GSLQQPARVQ GPVFAPIISP VTKFSQQLKL SFPRPCPSLF
101: LRKSSVFESR ASSVSAPDVE TTSNEIPFED YGRREVDPEV DEIITKEKNR QFRSLELIAS ENFTSRAVME TVGSCLTNKY SEGLPGKRYY GGNEFIDQLE
201: TLCQNRALAT FRLDSTKWGV NVQPLSGSPA NFAVYTAILK PHDRIMGLDL PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTAGIVD YDMLEKTAVL
301: FRPKLIIAGA SAYSRDFDYP RMRKIADSVG AFLMMDMAHI SGLVAASVVA DPFEYCDIVT TTTHKSLRGP RGGMIFFKKD PVNGVELESA INNAVFPGLQ
401: GGPHNHTIGG LAVCLKHAQS PEFKAYQKRV VANCRSLANR LVELGFKLVS GGSDNHLVLV DLRPLGMDGA RVEKILDMAS ITLNKNSVPG DKSALVPGGI
501: RIGTPAMTTR GLSEKDFVVV ADLIKEGVEI TMEAKKLVSG TKLGEFTKFV TSPEFPLRER VESLKDRVES FTSRFPIPGV

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.