CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23549
KRH26204
KRH44417
KRH47491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	KRH23549	AT3G15660.1	21798944
AT4G32520.1	KRH44417	AT3G15660.1	21798944
AT4G32520.1	KRH47491	AT3G15660.1	21798944
AT4G32520.1	KRH07754	AT4G32520.1	21798944
AT4G32520.1	KRH11116	AT4G32520.1	21798944
AT4G32520.1	KRH11117	AT4G32520.1	21798944
AT4G32520.1	KRH21130	AT4G32520.1	21798944
AT4G32520.1	KRH26204	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11116	Soybean	cytosol	43.47	95.49
KRH11117	Soybean	plastid	40.11	94.71
KRH26204	Soybean	cytosol	31.34	84.42
GSMUA_Achr10P...	Banana	cytosol	59.33	83.68
KRH07754	Soybean	cytosol, nucleus, peroxisome	33.4	82.87
Solyc08g065490.2.1	Tomato	nucleus, plastid	78.73	80.53
Solyc12g095930.1.1	Tomato	plastid	78.73	80.08
VIT_04s0008g00770.t01	Wine grape	plastid	77.99	79.17
AT4G32520.1	Thale cress	plastid	74.81	75.8
Bra040080.1-P	Field mustard	plastid	73.32	74.29
CDY39889	Canola	plastid	73.51	67.93
PGSC0003DMT400002684	Potato	plastid	26.31	66.82
CDY23328	Canola	golgi, plasma membrane	73.32	63.39
KRH16896	Soybean	mitochondrion	53.92	57.0
KRH72501	Soybean	mitochondrion	54.48	56.81
KRH58850	Soybean	cytosol	50.19	56.16
KRH45493	Soybean	mitochondrion	53.92	55.79
KRG99502	Soybean	mitochondrion	53.92	55.79
KRH39500	Soybean	mitochondrion	51.68	53.58
KRH42751	Soybean	endoplasmic reticulum, nucleus	51.68	48.43
KRH26369	Soybean	cytosol	47.95	45.65
KRH44066	Soybean	plastid	47.39	44.88
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	45.52	44.53
KRH64758	Soybean	cytosol	37.69	40.56
KRH64759	Soybean	cytosol, peroxisome	7.65	39.42
KRH18830	Soybean	cytosol, peroxisome, plastid	8.58	35.66

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100305381	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02008340	UniProt:C6ZJY9	EMBL:EU912422
EnsemblPlantsGene:GLYMA_13G222300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	EnsemblPlants:KRH21130	ProteinID:KRH21130	ProteinID:KRH21130.1	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	MetaCyc:PWY-1622	MetaCyc:PWY-181
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI0001B06DF6	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33522900..33527302

Molecular Weight (calculated)

58413.2 Da

IEP (calculated)

7.868

GRAVY (calculated)

-0.166

Length

536 amino acids

Sequence
(BLAST)

001: MQACTTMSSL QQQPIWTKGL NFPAKGYGSN NGFLPQVRFC NIKPSKASHV EASLVTGKPS SVPFSVPEIG GDGSSFLDYG LSEADPDVRA IIDKEKDRQF
101: KSLELIASEN FTSRAVMEAV GSCLTNKYSE GLPGKRYYGG NEYIDELEIL CQQRALAAFH VDENKWGVNV QTLSGSPANF AVYTAVLKPH DRIMGLDLPH
201: GGHLSHGFMT PKKRVSATSI YFESMPYRLD ESTGLIDYDM LEKTATLFRP KLIVAGASAY PRDIDYPRMR KLITSYMHGK IADEVGAFLM MDMAHISGLV
301: AASVLSNPFE YCDIVTTTTH KSLRGPRGGM IFFKKDTVHG VDLEPAINNA VFPGLQGGPH NHTIGGLAVC LKYAQSPEFK NYQNQVVANC RALAKRLIEH
401: GYKLVSGGSD NHLVLVDLRP SGLDGARVEK ILDLASITLN KNSVPGDKSA LVPGGIRIGA PAMTTRGLGE KEFSLIADFI HEGVQISLEA KSLVSGTKLQ
501: DFLKFVTSSE FPLGEKVSEL RRKVEALTTQ YPIPGV

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.