CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16896	Soybean	mitochondrion	95.53	96.84
VIT_18s0001g07960.t01	Wine grape	mitochondrion	87.16	86.82
CDY49212	Canola	mitochondrion	84.05	84.87
KRG99502	Soybean	mitochondrion	85.21	84.56
CDX96315	Canola	mitochondrion	84.44	84.44
Solyc04g076790.2.1	Tomato	nucleus	84.82	84.33
PGSC0003DMT400016362	Potato	mitochondrion	84.82	84.01
KRH45493	Soybean	mitochondrion	84.63	83.98
GSMUA_Achr7P27360_001	Banana	mitochondrion	83.85	83.85
Os03t0738400-01	Rice	mitochondrion	82.88	83.04
Bra016147.1-P	Field mustard	mitochondrion	84.44	82.98
TraesCS4A01G246100.1	Wheat	mitochondrion	82.3	82.94
TraesCS4B01G069300.1	Wheat	mitochondrion	82.3	82.94
TraesCS4D01G068100.1	Wheat	mitochondrion	82.3	82.94
OQU91027	Sorghum	mitochondrion	82.3	82.46
AT5G26780.3	Thale cress	mitochondrion	85.21	82.18
GSMUA_Achr6P23140_001	Banana	mitochondrion	83.07	82.12
CDX72795	Canola	mitochondrion	84.63	82.08
GSMUA_Achr3P30760_001	Banana	mitochondrion	81.91	80.34
KRH39500	Soybean	mitochondrion	80.16	79.69
HORVU4Hr1G011500.1	Barley	plasma membrane	82.49	79.55
KRH11116	Soybean	cytosol	28.4	59.84
KRH26204	Soybean	cytosol	21.98	56.78
KRH07754	Soybean	cytosol, nucleus, peroxisome	23.74	56.48
KRH58850	Soybean	cytosol	52.53	56.37
KRH21130	Soybean	plastid	56.81	54.48
KRH11117	Soybean	plastid	21.79	49.34
KRH42751	Soybean	endoplasmic reticulum, nucleus	54.09	48.6
Zm00001d009738_P001	Maize	cytosol, plastid	20.23	47.93
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	48.83	45.8
KRH26369	Soybean	cytosol	49.61	45.29
KRH44066	Soybean	plastid	49.81	45.23
KRH64758	Soybean	cytosol	40.27	41.57
KRH64759	Soybean	cytosol, peroxisome	8.37	41.35
Bra003928.1-P	Field mustard	mitochondrion	80.93	37.38
CDX68316	Canola	mitochondrion	84.63	37.18
KRH18830	Soybean	cytosol, peroxisome, plastid	8.75	34.88

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100816213	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A0A0R4J2Q8	EMBL:ACUP02001217	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G217100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH72501
ProteinID:KRH72501	ProteinID:KRH72501.1	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF26	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201
MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0001D62E90	:

Description

hypothetical protein

Coordinates

chr2:+:40402376..40409818

Molecular Weight (calculated)

56945.2 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.301

Length

514 amino acids

Sequence
(BLAST)

001: MAMALPLRRL SSTLNKPLAS ATSIYHRMSS SLSAQEKDKS RADWIKQLND PLETIDPEIA DIIELEKARQ WKGFELIPSE NFTSLSVMQA VGSVMTNKYS
101: EGYPGARYYG GNEYIDMAET LCQKRALEAF RLDPAKWGVN VQSLSGSPSN FQVYTALLKP HERIMALDLP HGGHLSHGYQ TDTKKISAVS IFFETMPYRL
201: NESTGYIDYD QLEKSAVLFR PKLIVAGASA YARLYDYARV RKVCDKQKAV LLADMAHISG LVAAGVIPSP FDYADVVTTT THKSLRGPRG AMIFFRKGVK
301: EINKQGKEVL YDYEDRINQA VFPGLQGGPH NHTISGLAVA LKQAMTPEFK NYQKQVLSNC SAFAQSLLEK GYELVSGGTD NHLVLVNLRN KGIDGSRVEK
401: VLEAVHIAAN KNTVPGDVSA MVPGGIRMGT PALTSRGFVE EDFEKVAEYF DAAVKLALQI KENTNGTKLK DFVAAMQSDE QVQSKIANLR HEVEDYAKQF
501: PTIGFDIETM KYGK

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.