Factsheet for Bra003928.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
plasma membrane 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68316	Canola	mitochondrion	94.34	89.74
Bra016147.1-P	Field mustard	mitochondrion	41.87	89.1
AT5G26780.3	Thale cress	mitochondrion	40.79	85.18
VIT_18s0001g07960.t01	Wine grape	mitochondrion	38.19	82.36
PGSC0003DMT400016362	Potato	mitochondrion	38.19	81.89
Solyc04g076790.2.1	Tomato	nucleus	38.01	81.82
KRH16896	Soybean	mitochondrion	36.93	81.07
KRH72501	Soybean	mitochondrion	37.38	80.93
GSMUA_Achr7P27360_001	Banana	mitochondrion	37.11	80.35
Bra011796.1-P	Field mustard	mitochondrion	36.93	79.5
GSMUA_Achr6P23140_001	Banana	mitochondrion	36.93	79.04
Bra010622.1-P	Field mustard	mitochondrion	36.66	78.92
GSMUA_Achr3P30760_001	Banana	mitochondrion	36.03	76.53
Bra032749.1-P	Field mustard	cytosol	24.44	57.75
Bra014001.1-P	Field mustard	cytosol	22.37	57.37
Bra040080.1-P	Field mustard	plastid	24.8	52.17
Zm00001d009738_P001	Maize	cytosol, plastid	8.98	46.08
Bra022129.1-P	Field mustard	cytosol	5.57	43.66
Bra031358.1-P	Field mustard	cytosol	22.1	42.2
Bra016392.1-P	Field mustard	cytosol	21.83	42.04
Bra036774.1-P	Field mustard	cytosol	21.74	41.02

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:2.60.120.260	MapMan:20.4.3.4	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EnsemblPlantsGene:Bra003928	EnsemblPlants:Bra003928.1
EnsemblPlants:Bra003928.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0005575	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	InterPro:IPR012919	InterPro:IPR015421	InterPro:IPR015422
UniProt:M4CI95	HAMAP:MF_00051	PFAM:PF00464	PFAM:PF07738	ScanProsite:PS00096	PFscan:PS51469
PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF49785
SUPFAM:SSF53383	InterPro:SUN_dom	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	TMHMM:TMhelix	UniParc:UPI0002541888
SEG:seg	:	:	:	:	:

Description

AT5G26780 (E=6e-256) SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA07:+:15804305..15811063

Molecular Weight (calculated)

125324.0 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.396

Length

1113 amino acids

Sequence
(BLAST)

0001: MQRSRRALLL RRRVSEDASK GRNRLYKVSL SLVFLVWGLL LLSTLWISHG NDHKGNSLAG SVQNGDQDED SADDTYEPVD APSLEYTSVH IPAAKEIKDT
0101: VDGNVTESKE DIRLVNQSEM VNSNTGLDND TETNTSKLDQ LSRDVPLGFD EFKSRVPTTK DESVANQVSG VIHRMEPGGK EYNYAAASKG AKVLSSNKES
0201: KGATSILSPD NDKYLMNPCS TEDKFVVIEL SEETLVNTIK IANFEHYSSN LKEFEILGTL VYPSDAWVHL GNFTALNMKN EQNFTLVDPQ WVRYLKVNFL
0301: SHYGSEFYCT LSLLEVYGVD AVERMLEDLI SIQDKNIVRL TQERDSEKPV QVIEDGSKQK EKEQETSPES GVVKAEVAAE RKKLMDTVEE LKHHQPGSRM
0401: PGDTVLKILM QKIMSLDLSL SVLESYLEEL SLRYMKIFKD MDVEAIKREK EVGEMRLELD EMKEREEKMK REAMEIREWR RKVETEIENG QNEKEKVMEK
0501: LEEVLEKMEW MEKKGVAVFT ICVGFGALAV VAVILGKLIG LAEKPADLAW LLLLISSIFV MIGLFYYAQS AESSLERFTA QAQSEKMLKI IECNGYGFDS
0601: DQAQRESSHV PGSINVLHRP DHTGKVKCRG SWRSEWVIRY VKWIRQLNAP LEEIDPEIAD IIELEKARQW KGFELIPSEN FTSASVMEAV GSVMTNKYSE
0701: GYPGARYYGG NEYIDMAESL CQKRALEAFH LDPSKWGVNV QSLSGSPANF QVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI FFETMPYRLD
0801: ENTGYIDYDQ LEKSAVLFRP KLIVAGASAY ARLYDYARIR KVCDKQKAVM LADMAHISGL VAAGVIPSPF EYADVVTTTT HKSLRGPRGA MIFFRKGLKE
0901: VNKQGKEVMY DYEDRINAAV FPGLQGGPHN HTITGLAVAL KQVKTPEYKA YQDQVLRNCS KFAETLLSKG YDLVSGGTEN HLVLVNLKNK GIDGSRVEKV
1001: LESVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFIEE DFAKVAEYFD LAVKIALKIK AESQGTKLKD FVATMQSNEK LQSEMAKLRE MVEEYAKQFP
1101: TIGFEKETMR YKE

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.