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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96315 Canola mitochondrion 91.37 94.75
CDY49212 Canola mitochondrion 90.24 94.5
Bra016147.1-P Field mustard mitochondrion 91.18 92.93
CDX72795 Canola mitochondrion 91.74 92.26
VIT_18s0001g07960.t01 Wine grape mitochondrion 84.8 87.6
KRH16896 Soybean mitochondrion 81.43 85.6
KRH72501 Soybean mitochondrion 82.18 85.21
PGSC0003DMT400016362 Potato mitochondrion 82.74 84.97
Solyc04g076790.2.1 Tomato nucleus 82.36 84.91
AT4G37930.1 Thale cress mitochondrion 82.36 84.91
GSMUA_Achr7P27360_001 Banana mitochondrion 80.86 83.85
GSMUA_Achr6P23140_001 Banana mitochondrion 80.86 82.88
GSMUA_Achr3P30760_001 Banana mitochondrion 78.8 80.15
AT4G13930.1 Thale cress cytosol 49.91 56.48
AT4G13890.1 Thale cress cytosol 48.22 54.68
AT4G32520.1 Thale cress plastid 54.03 54.44
Zm00001d009738_P001 Maize cytosol, plastid 19.14 47.0
CDX68316 Canola mitochondrion 90.62 41.28
AT1G36370.1 Thale cress plastid 45.78 40.8
Bra003928.1-P Field mustard mitochondrion 85.18 40.79
AT1G22020.1 Thale cress cytosol 45.22 40.23
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10EntrezGene:832736ProteinID:AED93603.1ProteinID:AED93604.1ArrayExpress:AT5G26780
EnsemblPlantsGene:AT5G26780RefSeq:AT5G26780TAIR:AT5G26780RefSeq:AT5G26780-TAIR-GEnsemblPlants:AT5G26780.3TAIR:AT5G26780.3
Unigene:At.22652EMBL:BT001097EMBL:BT001113ncoils:CoilGO:GO:0003674GO:GO:0003824
GO:GO:0004372GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016740GO:GO:0019264GO:GO:0030170GO:GO:0035999InterPro:IPR015421InterPro:IPR015422
HAMAP:MF_00051RefSeq:NP_568488.2RefSeq:NP_851081.1PFAM:PF00464PIRSF:PIRSF000412PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0020148PO:PO:0025022PO:PO:0025281
ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF12InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_major
Symbol:SHM2SUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI00000AE5B4:
Description
SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
Coordinates
chr5:+:9418195..9422091
Molecular Weight (calculated)
59133.3 Da
IEP (calculated)
9.096
GRAVY (calculated)
-0.258
Length
533 amino acids
Sequence
(BLAST)
001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAELD IRPTVIISYG LSMQTLLAKG YDLVSGGTDN
401: HLVLVNLKNK GIDGSRVEKV LELVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFIEE DFAKVAEYFD LAVKIALKIK AESQGTKLKD FVATMQSNEK
501: LQSEMSKLRE MVEEYAKQFP TIGFEKETMR YKE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.