Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040080.1-P | Field mustard | plastid | 89.41 | 89.41 |
| GSMUA_Achr10P... | Banana | cytosol | 61.25 | 85.26 |
| CDY39889 | Canola | plastid | 89.41 | 81.55 |
| Solyc12g095930.1.1 | Tomato | plastid | 79.21 | 79.51 |
| VIT_04s0008g00770.t01 | Wine grape | plastid | 78.64 | 78.79 |
| Solyc08g065490.2.1 | Tomato | nucleus, plastid | 77.88 | 78.63 |
| KRH11116 | Soybean | cytosol | 35.92 | 77.87 |
| CDY23328 | Canola | golgi, plasma membrane | 89.22 | 76.13 |
| KRH21130 | Soybean | plastid | 75.8 | 74.81 |
| KRH26204 | Soybean | cytosol | 27.6 | 73.37 |
| KRH07754 | Soybean | cytosol, nucleus, peroxisome | 29.49 | 72.22 |
| KRH11117 | Soybean | plastid | 29.87 | 69.6 |
| PGSC0003DMT400002684 | Potato | plastid | 26.28 | 65.88 |
| AT4G13930.1 | Thale cress | cytosol | 51.61 | 57.96 |
| AT4G37930.1 | Thale cress | mitochondrion | 54.82 | 56.09 |
| AT4G13890.1 | Thale cress | cytosol | 48.77 | 54.89 |
| AT5G26780.3 | Thale cress | mitochondrion | 54.44 | 54.03 |
| AT1G36370.1 | Thale cress | plastid | 47.07 | 41.64 |
| AT1G22020.1 | Thale cress | cytosol | 46.5 | 41.07 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
| Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | EntrezGene:829387 | UniProt:A0A178UTK1 | ProteinID:AEE86071.1 | ProteinID:AEE86072.1 |
| EMBL:AF375450 | ArrayExpress:AT4G32520 | EnsemblPlantsGene:AT4G32520 | RefSeq:AT4G32520 | TAIR:AT4G32520 | RefSeq:AT4G32520-TAIR-G |
| EnsemblPlants:AT4G32520.1 | TAIR:AT4G32520.1 | Unigene:At.27717 | EMBL:BT000641 | ProteinID:CAA22579.1 | ProteinID:CAB79969.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 | InterPro:IPR015421 | InterPro:IPR015422 | HAMAP:MF_00051 |
| RefSeq:NP_001119098.1 | RefSeq:NP_567895.1 | ProteinID:OAO96945.1 | PFAM:PF00464 | PIRSF:PIRSF000412 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF20 | InterPro:PyrdxlP-dep_Trfase |
| InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | UniProt:Q94JQ3 | Symbol:SHM3 | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase |
| InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI0000162B6C | : | : | : | : |
Description
SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
Coordinates
chr4:-:15689436..15692989
Molecular Weight (calculated)
57986.1 Da
IEP (calculated)
9.218
GRAVY (calculated)
-0.175
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.