Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69223 | Canola | cytosol | 93.42 | 93.42 |
| Bra032749.1-P | Field mustard | cytosol | 93.42 | 93.42 |
| CDY50421 | Canola | cytosol | 85.56 | 92.86 |
| Bra014001.1-P | Field mustard | cytosol | 85.56 | 92.86 |
| CDY01173 | Canola | cytosol | 85.56 | 92.86 |
| CDY47310 | Canola | cytosol | 85.56 | 92.86 |
| VIT_05s0029g00310.t01 | Wine grape | cytosol | 90.66 | 90.66 |
| Zm00001d040457_P001 | Maize | mitochondrion | 18.47 | 89.69 |
| Solyc05g053810.2.1 | Tomato | nucleus, plastid | 89.38 | 89.38 |
| PGSC0003DMT400040717 | Potato | cytosol | 89.38 | 89.38 |
| GSMUA_Achr9P01620_001 | Banana | cytosol | 81.53 | 87.67 |
| PGSC0003DMT400011868 | Potato | cytosol | 87.47 | 87.47 |
| GSMUA_Achr6P06520_001 | Banana | cytosol | 82.59 | 87.42 |
| Solyc12g098490.1.1 | Tomato | extracellular, nucleus, unclear | 87.26 | 87.26 |
| KRH58850 | Soybean | cytosol | 87.9 | 86.43 |
| EES08452 | Sorghum | cytosol | 86.2 | 86.2 |
| GSMUA_Achr8P00310_001 | Banana | cytosol | 46.07 | 86.11 |
| GSMUA_Achr9P07310_001 | Banana | cytosol | 73.67 | 85.68 |
| Os11t0455800-01 | Rice | plasma membrane | 84.93 | 84.93 |
| TraesCS2D01G493600.1 | Wheat | cytosol | 84.29 | 84.29 |
| TraesCS2A01G493700.1 | Wheat | plastid | 84.29 | 84.29 |
| TraesCS2B01G521700.1 | Wheat | cytosol | 84.08 | 84.08 |
| AT4G13890.1 | Thale cress | cytosol | 81.32 | 81.49 |
| Zm00001d049234_P001 | Maize | plastid | 85.99 | 77.0 |
| KRH42751 | Soybean | endoplasmic reticulum, nucleus | 89.17 | 73.43 |
| HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 84.08 | 71.87 |
| AT4G37930.1 | Thale cress | mitochondrion | 57.32 | 52.22 |
| AT4G32520.1 | Thale cress | plastid | 57.96 | 51.61 |
| AT5G26780.3 | Thale cress | mitochondrion | 56.48 | 49.91 |
| AT1G36370.1 | Thale cress | plastid | 62.0 | 48.83 |
| AT1G22020.1 | Thale cress | cytosol | 60.51 | 47.58 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
| Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | MapMan:4.1.4.3.1 | EntrezGene:827027 | ProteinID:AEE83344.1 | EMBL:AF324991 |
| EMBL:AF361589 | ArrayExpress:AT4G13930 | EnsemblPlantsGene:AT4G13930 | RefSeq:AT4G13930 | TAIR:AT4G13930 | RefSeq:AT4G13930-TAIR-G |
| EnsemblPlants:AT4G13930.1 | TAIR:AT4G13930.1 | EMBL:AY086929 | EMBL:AY093987 | Unigene:At.23373 | ProteinID:CAB10172.1 |
| ProteinID:CAB78435.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006545 | GO:GO:0006730 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030170 |
| GO:GO:0035999 | GO:GO:0046686 | InterPro:IPR015421 | InterPro:IPR015422 | HAMAP:MF_00051 | RefSeq:NP_193129.1 |
| UniProt:O23254 | PFAM:PF00464 | PIRSF:PIRSF000412 | PO:PO:0000005 | PO:PO:0000282 | PO:PO:0000293 |
| PO:PO:0001170 | PO:PO:0005020 | PO:PO:0006339 | PO:PO:0007131 | PO:PO:0009001 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0025281 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF11 | InterPro:PyrdxlP-dep_Trfase |
| InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | Symbol:SHM4 | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS |
| UniParc:UPI00000ABBC0 | SEG:seg | : | : | : | : |
Description
SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
Coordinates
chr4:-:8047692..8050157
Molecular Weight (calculated)
51720.8 Da
IEP (calculated)
7.258
GRAVY (calculated)
-0.255
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.