Factsheet for Os11t0455800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0478500-01
Os09t0464400-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	Os08t0478500-01	AT4G24560.1	23232097
AT4G13930.1	Os09t0464400-00	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G493600.1	Wheat	cytosol	95.12	95.12
TraesCS2A01G493700.1	Wheat	plastid	95.12	95.12
TraesCS2B01G521700.1	Wheat	cytosol	94.9	94.9
Zm00001d040457_P001	Maize	mitochondrion	19.53	94.85
EES08452	Sorghum	cytosol	94.48	94.48
GSMUA_Achr8P00310_001	Banana	cytosol	47.56	88.89
GSMUA_Achr6P06520_001	Banana	cytosol	82.8	87.64
GSMUA_Achr9P01620_001	Banana	cytosol	80.25	86.3
GSMUA_Achr9P07310_001	Banana	cytosol	73.67	85.68
Bra032749.1-P	Field mustard	cytosol	85.56	85.56
CDY69223	Canola	cytosol	85.56	85.56
Zm00001d049234_P001	Maize	plastid	95.33	85.36
VIT_05s0029g00310.t01	Wine grape	cytosol	85.35	85.35
AT4G13930.1	Thale cress	cytosol	84.93	84.93
Solyc05g053810.2.1	Tomato	nucleus, plastid	84.93	84.93
CDY50421	Canola	cytosol	78.13	84.79
CDY01173	Canola	cytosol	78.13	84.79
CDY47310	Canola	cytosol	77.92	84.56
Bra014001.1-P	Field mustard	cytosol	77.92	84.56
PGSC0003DMT400040717	Potato	cytosol	84.5	84.5
PGSC0003DMT400011868	Potato	cytosol	84.29	84.29
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	83.86	83.86
KRH58850	Soybean	cytosol	82.8	81.42
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	95.12	81.31
AT4G13890.1	Thale cress	cytosol	75.37	75.53
Os12t0409000-01	Rice	plasma membrane	84.93	75.33
KRH42751	Soybean	endoplasmic reticulum, nucleus	84.93	69.93
Os03t0738400-01	Rice	mitochondrion	56.9	52.24
Os05t0429000-01	Rice	cytosol	62.21	49.91
Os01t0874900-01	Rice	extracellular	61.78	48.5

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:4350456	UniProt:A0A0P0Y248	ProteinID:BAT13923.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	EnsemblPlantsGene:Os11g0455800	EnsemblPlants:Os11t0455800-01
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0000F6CAC9
RefSeq:XP_015617125.1	SEG:seg	:	:	:	:

Description

serine hydroxymethyltransferase 2Similar to Serine hydroxymethyltransferase. (Os11t0455800-01);Similar to Serine hydroxymethyltransferase. (Os11t0455800-02)

Coordinates

chr11:+:15436736..15440042

Molecular Weight (calculated)

51448.7 Da

IEP (calculated)

7.563

GRAVY (calculated)

-0.217

Length

471 amino acids

Sequence
(BLAST)

001: MDSVASWGLT PLAAADPLVH DLLEREKRRQ RSGIELIASE NFTSFAVMEA LGSALTNKYS EGMPGARYYG GNDVIDEIEN LCRDRALAAF RLDAASWGVN
101: VQPYSGSPAN FAAYTALLNP HDRIMGLDLP SGGHLTHGYY TAGGKKISAT SIYFESLPYK VSAATGYIDY EKLEEKALDF RPKLIICGGS AYPRDWDYAK
201: LRAVADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDYEDKIN FAVFPSLQGG PHNHQIAALA
301: VALQQTMTPG FKAYAKQVKA NAVAIGKYLM SKGYKMVTDG TENHLVLWDL RPLGLTGNKV EKMCDLCSIT LNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFEQIGE FLHQAVTICL NIQKEHGKLL KDFSKGLVNN KDIENLKLEV EKFATSFDMP GFTLDSMKYK E

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.