Factsheet for Os08t0478500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0738400-01
Os11t0455800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	Os11t0455800-01	AT4G13930.1	23232097
AT4G24560.1	Os03t0738400-01	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050489_P001	Maize	nucleus	31.08	66.52
OQU80649	Sorghum	nucleus	53.48	64.89
TraesCS7B01G179000.2	Wheat	plastid	65.03	64.05
TraesCS7D01G280800.4	Wheat	plastid	64.93	64.01
TraesCS7A01G282200.4	Wheat	plastid	64.62	63.9
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	59.3	58.41
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	49.9	52.59
GSMUA_Achr10P...	Banana	nucleus	20.04	48.28
GSMUA_Achr7P19010_001	Banana	nucleus	20.65	43.91
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	30.98	40.4
GSMUA_Achr5P22990_001	Banana	vacuole	37.12	40.38
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	15.75	39.9
CDY08792	Canola	vacuole	30.47	39.79
GSMUA_Achr10P...	Banana	golgi	18.3	39.78
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	30.06	39.73
Bra024386.1-P	Field mustard	golgi	30.57	38.98
CDY14564	Canola	golgi	30.37	38.98
VIT_00s0199g00030.t01	Wine grape	vacuole	34.36	37.21
KRH74502	Soybean	golgi, plasma membrane, vacuole	32.21	33.98
KRH69660	Soybean	golgi	32.52	33.9
KRH52893	Soybean	extracellular, golgi, vacuole	29.65	32.66
KRH16837	Soybean	golgi	34.76	32.54
KRH72452	Soybean	golgi, plasma membrane	33.64	31.76
CDX92643	Canola	golgi	32.62	31.49
CDY11021	Canola	golgi	32.41	31.42
Bra019219.1-P	Field mustard	golgi	32.41	31.32
CDY03441	Canola	golgi	32.11	31.0
AT4G24560.1	Thale cress	extracellular, golgi	31.9	30.95
Bra013814.1-P	Field mustard	golgi	31.9	30.59
CDY34291	Canola	golgi	31.9	30.59
KRH62182	Soybean	golgi, vacuole	35.58	30.58
Solyc04g076210.2.1	Tomato	nucleus	33.84	30.12
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	37.22	29.71
Os04t0452400-01	Rice	nucleus	10.43	27.79
Os03t0190800-01	Rice	cytosol	10.12	27.05
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	25.56	25.64
Os02t0573400-01	Rice	nucleus	10.74	25.3
Os06t0654000-01	Rice	cytosol, nucleus	21.06	21.82
Os05t0510300-01	Rice	plastid	13.39	20.34
Os04t0647300-01	Rice	nucleus	11.66	19.29
Os07t0661300-01	Rice	cytosol, plasma membrane	9.61	19.22
Os06t0184300-01	Rice	mitochondrion	13.6	14.39
Os02t0795000-01	Rice	nucleus	14.62	12.07

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EntrezGene:4345840	ProteinID:BAD09009.1	ProteinID:BAF23965.1
ProteinID:BAT05902.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	EnsemblPlantsGene:Os08g0478500	EnsemblPlants:Os08t0478500-01
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	UniProt:Q6ZJC2	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix
UniParc:UPI000023ACB6	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_015650572.1	InterPro:Znf_MYND	SEG:seg

Description

Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein. (Os08t0478500-01)

Coordinates

chr8:-:23593702..23601132

Molecular Weight (calculated)

107737.0 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.597

Length

978 amino acids

Sequence
(BLAST)

001: MAEAAGSSSS SSASAVVVAV VIAVVVVVWV VVRRKVRRAA ARREEVLRLT RLAQEESEMA EVECARAYYS ELFPSVVHAT EMVDEAAWGA PPAVVPAQAE
101: AEAEMEARAQ PQPQPPVGAK GVCAVCFRPT TFRCKQCKAV KYCSFKCQIA HWRQGHKNEC RPPSTDANHD DVAELSVAKE RKIEQTSASE ENIAETNTAA
201: TVKNLNDKTK DMPSEVLASV EVPDDDHSVS AVKLPQSSSQ VASLGSRKTE SNMKPTTPVE NGSYTKDLDE ALVCRFQPSP PKISGSGSLI NKESLIDSKK
301: HQDCSQTSNS KKYADNNNAQ AALPVAVEPK TSRTALHVEV GHSKTKAAGS DNIGVSKMVP SVLTVDKVSP VPGGRSVTPN SSKRADNIAE RNSKPSEKSI
401: STANSLATSL KKIVRQQTAP KVVRHYPSEP THFPYELFIK LYEKVELQPF GLHNLGNSCY ANAVLQCLMF TRPLTSYLLG GLHSKNCSKK EWCFMCEFEK
501: LVGEGRQGKI ALSPTGILSH LPDIGSSFGP GKQEDAHEFL RYAIDAMQSV CMKEARKSGT HRLHEETTLM QLIFGGYLRS KIRCTRCDAT SEQHERILDL
601: TVEIDGDISS LEGALERFTS TEVLDGDNKY KCSRCKSHER AKKKLTISEA PNVLTIALKR YQSGKFGKIN KAIRFPETLN LQRYMSPKAD DTSPVYSLYA
701: VVVHHDIMNA AFSGHYVCYV KDTHGKWYKT DDSQVKPVSL ENVMSKCAYM LLYARCSPRA PSSVRPALMA QDPARVKKDK ARVNSGRWHG GGPIHQGGQM
801: YADHMTDDLP HTYDEFGHGP YSPAESPSPS ESSSIFTSSD TGSHSTDSSE STRNSTSEDM ERLIFGDQVS YFDGSMFGHG ENGRMTYSRS KSSLGTSSSG
901: QEVDQYRPDE HRLQGAREGW NQGDESSSLY TNQSKHQFSS KLTEQYRRRL DGTEHDPGEA NSVLLRRSAR ERTAQTFY

Best Arabidopsis Sequence Match ( AT5G65450.1 )
(BLAST)

001: MMLVFLLIRR QWRSASVRRE EVIRLIALAT EESYLAEEVR PATVDYGGDS VSDVYRCAVC LYPTTTRCSQ CKSVRYCSSK CQILHWRRGH KEECRSPDYD
101: EEKEEYVQSD YDAKESNVDF PSRGTAYESS SNVSVDVACD MSTSRPSIHK VQPRSEAVDF TTSLNIKDNL YETRPLSRKK SRNRTDKVES ASNYSKGKTD
201: AKLRKLGNQN SRRSGDSANM SISDQFLSVG FEEEMNALKH ERITSEPSSA SAAMSSSSTL LLPSKANSKP KVSQASSSGL KTSVQKVVQH FRPPQSSKKS
301: QPSSSIDEMS FSYELFVKLY CDRVELQPFG LVNLGNSCYA NAVLQCLAFT RPLISYLIRG LHSKTCRKKS WCFVCEFEHL ILKARGGESP LSPIKILSKL
401: QKIGKHLGPG KEEDAHEFLR CAVDTMQSVF LKEAPAAGPF AEETTLVGLT FGGYLHSKIK CMACLHKSER PELMMDLTVE IDGDIGSLEE ALAQFTAYEV
501: LDGENRYFCG RCKSYQKAKK KLMILEGPNI LTVVLKRFQS DNFGKLSKPI HFPELLDISP YMSDPNHGDH PVYSLYAVVV HLDAMSTLFS GHYVCYIKTL
601: DGDWFKIDDS NVFPVQLETV LLEGAYMLLY ARDSPRPVSK NGGRKSKQRR NLAAIPSRKG NKKQRDGDNN SLLPRVDWSS GSLSSMFSSS DTTSSCSTKD
701: SSGIENLSDY LFGGVEPVWK WDRHNKSQTF D

Arabidopsis Description

UBP17ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.