Factsheet for Os04t0452400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12269	Sorghum	cytosol	97.55	97.28
Zm00001d003476_P002	Maize	cytosol	97.55	97.28
Zm00001d025570_P003	Maize	nucleus	97.0	96.74
TraesCS2A01G340100.1	Wheat	cytosol	97.0	96.22
GSMUA_Achr10P...	Banana	cytosol	84.74	90.14
HORVU2Hr1G079230.7	Barley	mitochondrion	97.28	86.23
GSMUA_Achr8P14390_001	Banana	cytosol	85.83	86.07
KRG97572	Soybean	nucleus	86.38	85.91
VIT_07s0141g00230.t01	Wine grape	nucleus	86.38	85.91
KRH31299	Soybean	nucleus	86.1	85.64
PGSC0003DMT400032703	Potato	nucleus	85.01	85.25
KRH59329	Soybean	nucleus	85.56	85.09
KRH43175	Soybean	nucleus	85.29	84.82
Solyc04g056290.2.1	Tomato	nucleus	83.92	83.47
GSMUA_Achr7P19160_001	Banana	mitochondrion	68.66	82.62
Os03t0190800-01	Rice	cytosol	81.74	81.97
GSMUA_Achr10P...	Banana	nucleus	83.38	81.82
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	74.11	75.98
Os02t0573400-01	Rice	nucleus	73.84	65.3
Os07t0661300-01	Rice	cytosol, plasma membrane	25.07	18.81
Os04t0647300-01	Rice	nucleus	28.88	17.94
Os05t0510300-01	Rice	plastid	24.25	13.82
Os06t0654000-01	Rice	cytosol, nucleus	27.25	10.59
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	27.79	10.46
Os08t0478500-01	Rice	plastid	27.79	10.43
Os06t0184300-01	Rice	mitochondrion	26.16	10.39
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.07	9.91
Os02t0795000-01	Rice	nucleus	26.43	8.19

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EntrezGene:4336009	EMBL:AK068069	ProteinID:BAF14865.1	ProteinID:BAS89472.1
MEROPS:C19.008	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	EnsemblPlantsGene:Os04g0452400	EnsemblPlants:Os04t0452400-01	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
UniProt:Q0JCS2	SUPFAM:SSF54001	UniParc:UPI0000DD90E4	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_015636929.1

Description

Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4). (Os04t0452400-01)

Coordinates

chr4:-:22567565..22573571

Molecular Weight (calculated)

41795.7 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.419

Length

367 amino acids

Sequence
(BLAST)

001: MVMGASGSKL EKALGDQFPE GERYFGLENF GNTCYCNSVL QALYFCIPFR EKLLEYYANN KTPGDAEENL LTCLADLFMQ VSQSKKKTGV IAPKRFVQRV
101: KKQNELFRSY MHQDAHEFLN FLLNELVDIL EKESNAAKDS PQSSSPEKVP NGPVQPLANG VRKEPPVTLV HKNFQGILTN ETRCLRCETV TARDETFFDL
201: SVDIEQNSSI TSCLKNFCST ETLNAEDKFF CDKCCSLQEA QKRMKIKKAP HILVIHLKRF KYIEQLGRYK KLSYRVVFPM ELKLSTSDDV DTEYSLFAVV
301: VHVGSGPNHG HYVSLVKSHN HWLFFDDENV EMVEESTLQT FFGSSHEYSG NTDHGYILFY EGLGGKS

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.