Factsheet for Zm00001d025570_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12269	Sorghum	cytosol	98.91	98.91
Zm00001d003476_P002	Maize	cytosol	98.91	98.91
Os04t0452400-01	Rice	nucleus	96.74	97.0
TraesCS2A01G340100.1	Wheat	cytosol	95.38	94.86
GSMUA_Achr10P...	Banana	cytosol	84.51	90.14
VIT_07s0141g00230.t01	Wine grape	nucleus	86.41	86.18
KRG97572	Soybean	nucleus	85.87	85.64
KRH59329	Soybean	nucleus	85.6	85.37
KRH31299	Soybean	nucleus	85.6	85.37
KRH43175	Soybean	nucleus	85.33	85.09
HORVU2Hr1G079230.7	Barley	mitochondrion	95.65	85.02
GSMUA_Achr8P14390_001	Banana	cytosol	84.51	84.97
PGSC0003DMT400032703	Potato	nucleus	84.24	84.7
Solyc04g056290.2.1	Tomato	nucleus	84.24	84.01
GSMUA_Achr7P19160_001	Banana	mitochondrion	68.21	82.3
GSMUA_Achr10P...	Banana	nucleus	82.61	81.28
Zm00001d028005_P001	Maize	nucleus	80.16	80.6
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	74.46	76.54
Zm00001d016918_P001	Maize	plastid	76.9	67.87
Zm00001d000312_P002	Maize	plastid	18.75	24.56
Zm00001d002086_P001	Maize	plastid	27.72	18.12
Zm00001d022414_P001	Maize	cytosol	24.73	16.49
Zm00001d051513_P001	Maize	nucleus	24.73	15.4
Zm00001d050489_P001	Maize	nucleus	18.75	15.1
Zm00001d010710_P002	Maize	plastid	26.36	14.2
Zm00001d047023_P001	Maize	nucleus	23.1	13.69
Zm00001d017686_P002	Maize	mitochondrion, nucleus	25.0	12.43
Zm00001d020769_P005	Maize	nucleus	26.63	11.45
Zm00001d045104_P005	Maize	nucleus	27.17	11.07
Zm00001d036707_P006	Maize	plasma membrane	26.63	10.23
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	26.63	10.1
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	26.9	9.84
Zm00001d007096_P007	Maize	mitochondrion	25.0	7.78
Zm00001d000313_P001	Maize	nucleus	6.25	6.22

Protein Annotations

EntrezGene:100280339	MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	ProteinID:AQK43980.1	ProteinID:AQK43983.1	UniProt:B8A398
EMBL:BT056040	EMBL:BT065411	MEROPS:C19.008	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	UniParc:UPI000191776B	InterPro:USP_CS	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d025570	EnsemblPlants:Zm00001d025570_P003
EnsemblPlants:Zm00001d025570_T003	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 3

Coordinates

chr10:-:122602824..122612949

Molecular Weight (calculated)

41804.7 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.413

Length

368 amino acids

Sequence
(BLAST)

001: MVMGASGSKL EKALGDQFPE GERYFGLENF GNTCYCNSVL QALYFCIPFR EQLLEYYANN KTPGDAEENL LTCLADLFMQ ISQAKKKTGV IAPKRFVQRV
101: KKQNELFRSY MHQDAHEFLN FLLNELVDIL EKESSAAKDS PQSSSPEKAP NGPVQPLANG VKKEPPVTLV HKSFQGILTN ETRCLRCETV TARDETFLDL
201: SVDIEQNSSI TSCLKNFCST ETLNAEDKFF CDKCCSLQEA QKRMKIKKAP HILVIHLKRF KYIEQLGRYK KLSYRVVFPM ELKLSNSSDD VDTEYSLFAV
301: VVHVGSGPNH GHYVSLVKSH NHWLFFDDEN VEMVEEQTLQ TFFGTSHEYS GNTDHGYILF YEGLGGKS

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.