Factsheet for Zm00001d000313_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G14400.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G14400.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G14400.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G14400.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22316	Sorghum	plastid	81.35	44.46
Zm00001d010710_P002	Maize	plastid	79.19	42.9
HORVU1Hr1G077630.2	Barley	plastid	52.97	30.2
TraesCS1B01G342600.2	Wheat	plastid	52.7	30.19
TraesCS1D01G331300.1	Wheat	plastid	52.7	30.19
TraesCS1A01G329200.2	Wheat	plastid	52.16	29.74
Os05t0510300-01	Rice	plastid	50.81	29.19
GSMUA_Achr9P10330_001	Banana	mitochondrion	37.3	22.15
VIT_19s0093g00560.t01	Wine grape	mitochondrion	29.73	17.32
KRH43852	Soybean	nucleus	30.0	17.32
KRH13611	Soybean	nucleus	30.0	17.02
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	30.0	16.18
AT3G14400.1	Thale cress	mitochondrion	25.14	14.07
CDX75770	Canola	mitochondrion, nucleus	24.05	13.4
PGSC0003DMT400071055	Potato	mitochondrion	22.16	13.27
Bra027341.1-P	Field mustard	mitochondrion	24.32	13.1
CDX97571	Canola	mitochondrion	23.78	12.43
CDX98449	Canola	mitochondrion	23.24	12.22
Zm00001d050489_P001	Maize	nucleus	10.27	8.32
Zm00001d051513_P001	Maize	nucleus	10.54	6.6
Zm00001d028005_P001	Maize	nucleus	6.22	6.28
Zm00001d003476_P002	Maize	cytosol	6.22	6.25
Zm00001d025570_P003	Maize	nucleus	6.22	6.25
Zm00001d016918_P001	Maize	plastid	6.22	5.52
Zm00001d017686_P002	Maize	mitochondrion, nucleus	10.27	5.14
Zm00001d020769_P005	Maize	nucleus	11.08	4.79
Zm00001d045104_P005	Maize	nucleus	11.62	4.76
Zm00001d036707_P006	Maize	plasma membrane	11.35	4.38
Zm00001d047023_P001	Maize	nucleus	6.76	4.03
Zm00001d022414_P001	Maize	cytosol	5.68	3.8
Zm00001d002086_P001	Maize	plastid	5.41	3.55
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	8.65	3.3
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	8.92	3.28
Zm00001d007096_P007	Maize	mitochondrion	5.68	1.78
Zm00001d000312_P002	Maize	plastid	0.81	1.07

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	UniProt:A0A1X7YHN9	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	PFscan:PS50235	PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000842CDB7	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d000313	EnsemblPlants:Zm00001d000313_P001
EnsemblPlants:Zm00001d000313_T001	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 25

Coordinates

chrB73V4_ctg51:+:50346..55788

Molecular Weight (calculated)

40772.7 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.686

Length

370 amino acids

Sequence
(BLAST)

001: MELQDPQPVY NLFGCIVHSG LSPESGHYYA YVKDPSGQWF CCNDSHVSLS SSQNVLSEKV YILFYILNSK TQKSSTNGYS FTAAKPFSTN VIDISSTSPS
101: ETSKIPLVKQ NDLRLAKGNV LMPLRNGKTA SGPLIKPIHF KNSAAEKATP NGKINLTSKI NPEVNETVKL SESNGCKTEH FVGPSKINAN NTISCGEGGE
201: QSERILQDAN GNGQPIHQSQ YLGETSIGNA TPAQQVTSNG NATPAQQETS NGKASHAEQC FEGSSHQKEH ANSSGNKRQL EEDKFQKMLA KSASSELRLS
301: VWMDDVYNFM RSQKRRRLLS SDVTQDFDAM RKQLVSDSAA IFRSKVPESL MENLIKRLRS YFEGKHSPHE

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.