Factsheet for Solyc07g056520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071055	Potato	mitochondrion	85.28	94.66
VIT_19s0093g00560.t01	Wine grape	mitochondrion	53.35	57.64
KRH43852	Soybean	nucleus	52.19	55.85
Zm00001d000312_P002	Maize	plastid	22.59	55.16
KRH13611	Soybean	nucleus	52.19	54.91
AT3G14400.1	Thale cress	mitochondrion	47.67	49.47
Bra027341.1-P	Field mustard	mitochondrion	47.52	47.45
GSMUA_Achr9P10330_001	Banana	mitochondrion	42.86	47.19
CDX97571	Canola	mitochondrion	47.81	46.33
CDX98449	Canola	mitochondrion	47.38	46.16
CDX75770	Canola	mitochondrion, nucleus	44.46	45.93
HORVU1Hr1G077630.2	Barley	plastid	39.07	41.29
Os05t0510300-01	Rice	plastid	38.48	40.99
TraesCS1A01G329200.2	Wheat	plastid	38.63	40.83
TraesCS1D01G331300.1	Wheat	plastid	38.34	40.71
TraesCS1B01G342600.2	Wheat	plastid	38.34	40.71
KXG22316	Sorghum	plastid	38.63	39.14
Zm00001d010710_P002	Maize	plastid	38.48	38.65
Zm00001d000313_P001	Maize	nucleus	16.18	30.0
Solyc04g056290.2.1	Tomato	nucleus	14.72	27.37
Solyc09g015580.1.1	Tomato	vacuole	12.24	27.01
Solyc08g048410.1.1	Tomato	cytosol	6.56	26.95
Solyc09g015600.1.1	Tomato	extracellular	11.81	25.96
Solyc01g105240.2.1	Tomato	nucleus	13.7	25.68
Solyc09g015610.1.1	Tomato	cytosol	4.66	25.4
Solyc08g048310.1.1	Tomato	extracellular, vacuole	7.87	25.0
Solyc07g007640.1.1	Tomato	cytosol	8.16	23.63
Solyc09g017980.1.1	Tomato	extracellular	7.0	23.19
Solyc08g005080.1.1	Tomato	cytosol	16.33	23.09
Solyc09g017990.1.1	Tomato	plastid	15.74	22.64
Solyc10g047480.1.1	Tomato	nucleus	15.31	21.88
Solyc08g021790.1.1	Tomato	extracellular, vacuole	7.0	20.51
Solyc08g023360.1.1	Tomato	extracellular	7.43	20.08
Solyc08g021830.1.1	Tomato	cytosol	10.06	19.71
Solyc02g005600.1.1	Tomato	vacuole	13.99	19.67
Solyc12g096430.1.1	Tomato	nucleus, plastid	17.49	19.29
Solyc08g068810.2.1	Tomato	cytosol	14.58	18.21
Solyc08g076910.2.1	Tomato	nucleus	18.95	18.21
Solyc01g068240.2.1	Tomato	cytosol	13.41	17.26
Solyc08g069050.2.1	Tomato	extracellular	19.39	17.12
Solyc07g005530.2.1	Tomato	nucleus	22.59	16.79
Solyc11g065210.1.1	Tomato	cytosol	12.54	16.1
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	20.12	14.29
Solyc04g076210.2.1	Tomato	nucleus	19.39	12.1

Protein Annotations

MapMan:19.2.3.1.1.11	Gene3D:3.90.70.10	MEROPS:C19.A13	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4CGI4	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	EnsemblPlantsGene:Solyc07g056520.2	EnsemblPlants:Solyc07g056520.2.1	UniParc:UPI000276B260	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 25 [Source:Projected from Arabidopsis thaliana (AT3G14400) UniProtKB/Swiss-Prot;Acc:Q9FPS2]

Coordinates

chr7:-:64311085..64321361

Molecular Weight (calculated)

74987.1 Da

IEP (calculated)

9.451

GRAVY (calculated)

-0.471

Length

686 amino acids

Sequence
(BLAST)

001: MAYLQMNWQP NLLSHKRKTG PPLGLKNIGN TCYINSVLQC LTYTPPLAYF CLKSQHSASC DSEAAAASGK KSECPFCILE KRIARSLSLE SALDTPAKIN
101: SCLKIFAQHF RFGRQEDAHE FLRYVIDACH NTCLRLKKLQ QQTKKGGGGG VDGNGNTIVK EIFGGALQSQ VKCLSCGAES NKVDEIMDLS LDVLHSSSLK
201: DALQRFFQPE VLDGNNKYKC ENCKKLVTAR KQMSILQAPN VLVIQLKRFE GIYGGKIDKP IAFEEVLVLS SYMCKASQDL HPEYNLFGTI VHSGFSPDSG
301: HYYAYIKDAV GRWYCCNDSQ VSPKILQEVL SEKVYILFFS RTKQRSPSTK TCLSINGSKS NHSNGLAKSK ILTSDLAKTV NEKQVLGHPS EKENVVMSKV
401: SKVHSSPVRD LGIFEKSSFK RPTSGNIKMV FHSKESGNRT GDVRASVLTE KKITSLSNKN GVSKSCGNGQ GTRSHALTNG NGNGKLPIVA TSPVADGPHE
501: DYGGSNGKAA GKDSYHKEVN RSSSLANGNG KIQSVATDTL RGSLHRNNGE NSESLAAISS AYRDTSNGHV ESSSISGSKR KSPDQCILLE YDVQSRAKVE
601: ELKKELHQEA SSFLRTCGWS EEVYAFMRSK KSGTQSNFQA SDVNAMKELL IADAKSMFIS QIPQSLKGSL IERLTSFSQG TPPSST

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.