Factsheet for Solyc08g048310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 3
nucleus 1
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015610.1.1	Tomato	cytosol	37.5	64.29
Solyc08g048410.1.1	Tomato	cytosol	37.96	49.1
Solyc09g017980.1.1	Tomato	extracellular	37.96	39.61
Solyc09g015580.1.1	Tomato	vacuole	54.63	37.94
Solyc09g015600.1.1	Tomato	extracellular	52.31	36.22
Solyc09g017990.1.1	Tomato	plastid	65.28	29.56
Solyc08g021790.1.1	Tomato	extracellular, vacuole	28.7	26.5
Solyc08g023360.1.1	Tomato	extracellular	29.63	25.2
Solyc02g005600.1.1	Tomato	vacuole	55.56	24.59
Solyc08g021830.1.1	Tomato	cytosol	38.43	23.71
PGSC0003DMT400093591	Potato	cytosol	27.31	23.51
Solyc10g047480.1.1	Tomato	nucleus	49.54	22.29
Solyc08g005080.1.1	Tomato	cytosol	47.69	21.24
Solyc07g007640.1.1	Tomato	cytosol	20.37	18.57
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	26.39	16.19
VIT_02s0012g01340.t01	Wine grape	nucleus	36.57	15.05
Solyc08g076910.2.1	Tomato	nucleus	43.98	13.31
Solyc01g105240.2.1	Tomato	nucleus	20.37	12.02
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	32.41	11.95
Solyc04g056290.2.1	Tomato	nucleus	20.37	11.92
CDX76553	Canola	cytosol	34.72	11.68
Bra021031.1-P	Field mustard	nucleus	34.72	11.68
CDX87681	Canola	nucleus	31.48	10.79
AT4G17895.1	Thale cress	nucleus	34.72	10.79
KRH39541	Soybean	nucleus	36.11	10.55
Bra022060.1-P	Field mustard	nucleus	31.94	10.38
CDY37145	Canola	cytosol	31.94	10.36
Zm00001d051513_P001	Maize	nucleus	28.24	10.32
Bra025000.1-P	Field mustard	endoplasmic reticulum	34.26	10.15
CDY58499	Canola	endoplasmic reticulum	33.8	10.12
KRH74417	Soybean	nucleus	32.87	9.82
AT5G46740.1	Thale cress	nucleus, plastid	32.87	9.7
CDX77686	Canola	endoplasmic reticulum	33.8	9.67
HORVU6Hr1G067180.4	Barley	nucleus	29.17	8.53
TraesCS6A01G264800.1	Wheat	nucleus	28.7	8.45
TraesCS6D01G250100.1	Wheat	nucleus	28.7	8.39
Solyc08g068810.2.1	Tomato	cytosol	21.3	8.38
OQU85579	Sorghum	nucleus	28.7	8.32
TraesCS6B01G291800.1	Wheat	nucleus	28.24	8.25
Zm00001d017686_P002	Maize	mitochondrion, nucleus	28.24	8.24
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	25.0	7.87
Solyc12g096430.1.1	Tomato	nucleus, plastid	21.76	7.56
Solyc01g068240.2.1	Tomato	cytosol	18.06	7.32
Solyc11g065210.1.1	Tomato	cytosol	17.13	6.93
Solyc07g005530.2.1	Tomato	nucleus	25.0	5.85
Solyc08g069050.2.1	Tomato	extracellular	20.83	5.79
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	22.22	4.97
Solyc04g076210.2.1	Tomato	nucleus	22.69	4.46

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:K4CKI3	PFAM:PF00443	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc08g048310.1	EnsemblPlants:Solyc08g048310.1.1	UniParc:UPI000276C860
InterPro:USP_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:13838830..13840380

Molecular Weight (calculated)

25130.4 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.086

Length

216 amino acids

Sequence
(BLAST)

001: MLFKYGCAIF YAHRCVGLAP QIDRSCISIS NVYFFNFHLH CLNCGYLSVT RELQVDLSLD IEDVLSVSYA KESFTKIKKI KFCCERFKTL GPFEKQLLID
101: HSPNVVVLHL KRFKYNGLVI QKVEFSLGHY YNFIRCAPNE WYKFDDEKVD YVQEDLVLAE QAYILFYTKR GTPLFSEYIQ SHIPFVWLVN PTTSNGPNEP
201: TLMPKVNNVK NNVSHG

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.