Factsheet for Solyc09g017990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015580.1.1	Tomato	vacuole	59.33	91.0
Solyc09g015600.1.1	Tomato	extracellular	58.49	89.42
Solyc09g017980.1.1	Tomato	extracellular	29.56	68.12
Solyc02g005600.1.1	Tomato	vacuole	68.34	66.8
Solyc08g048310.1.1	Tomato	extracellular, vacuole	29.56	65.28
Solyc08g048410.1.1	Tomato	cytosol	22.43	64.07
Solyc09g015610.1.1	Tomato	cytosol	16.77	63.49
Solyc08g005080.1.1	Tomato	cytosol	57.02	56.08
Solyc08g021830.1.1	Tomato	cytosol	39.2	53.43
Solyc08g021790.1.1	Tomato	extracellular, vacuole	25.58	52.14
Solyc10g047480.1.1	Tomato	nucleus	50.52	50.21
Solyc08g023360.1.1	Tomato	extracellular	26.42	49.61
PGSC0003DMT400093591	Potato	cytosol	21.8	41.43
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	24.95	33.81
Solyc08g076910.2.1	Tomato	nucleus	42.14	28.15
VIT_02s0012g01340.t01	Wine grape	nucleus	28.51	25.9
Solyc07g007640.1.1	Tomato	cytosol	12.16	24.47
KRH39541	Soybean	nucleus	36.48	23.55
CDX87681	Canola	nucleus	30.82	23.33
Bra021031.1-P	Field mustard	nucleus	31.03	23.05
CDX76553	Canola	cytosol	31.03	23.05
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	27.88	22.7
CDY37145	Canola	cytosol	31.66	22.67
KRH74417	Soybean	nucleus	34.17	22.55
AT4G17895.1	Thale cress	nucleus	32.7	22.45
Bra022060.1-P	Field mustard	nucleus	31.03	22.26
Solyc01g105240.2.1	Tomato	nucleus	16.98	22.13
Zm00001d051513_P001	Maize	nucleus	27.25	22.0
Solyc04g056290.2.1	Tomato	nucleus	16.77	21.68
CDY58499	Canola	endoplasmic reticulum	32.29	21.36
Bra025000.1-P	Field mustard	endoplasmic reticulum	32.49	21.26
CDX77686	Canola	endoplasmic reticulum	32.29	20.4
AT5G46740.1	Thale cress	nucleus, plastid	31.24	20.36
TraesCS6D01G250100.1	Wheat	nucleus	29.56	19.08
TraesCS6A01G264800.1	Wheat	nucleus	29.35	19.07
OQU85579	Sorghum	nucleus	29.77	19.06
HORVU6Hr1G067180.4	Barley	nucleus	29.14	18.81
TraesCS6B01G291800.1	Wheat	nucleus	28.72	18.54
Zm00001d017686_P002	Maize	mitochondrion, nucleus	27.88	17.97
Solyc08g068810.2.1	Tomato	cytosol	18.24	15.85
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	22.64	15.74
Solyc12g096430.1.1	Tomato	nucleus, plastid	19.5	14.95
Solyc01g068240.2.1	Tomato	cytosol	16.35	14.63
Solyc11g065210.1.1	Tomato	cytosol	15.93	14.23
Solyc07g005530.2.1	Tomato	nucleus	25.79	13.33
Solyc08g069050.2.1	Tomato	extracellular	19.29	11.84
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	20.34	10.04
Solyc04g076210.2.1	Tomato	nucleus	21.8	9.46

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4CS67	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	EnsemblPlantsGene:Solyc09g017990.1	EnsemblPlants:Solyc09g017990.1.1	UniParc:UPI000276C0FE	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:12265300..12268630

Molecular Weight (calculated)

54357.0 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.410

Length

477 amino acids

Sequence
(BLAST)

001: MGKNISENLT SPNHQTINFD EIEGKNINFS SMKTEVEEEE KNEKYLGLFE VSPDQIESAQ TIITSADSNS IGYIVSSDRS GYSCSDGDKW SPLKGESSSL
101: IGAICSSELE NFEKVVAEES KLIEYKPFKI TGIGMRNLGN TCFLNVIVQS FMHTVVLLQL LRSIDHVSPC LNFSSHFNVN KQEDAHEFLQ CFLNKLEICC
201: NYLDTKENIV KEAFGGRLVS KLRCCNCGYS SITREPLIDL SLEIEDVDSV SAAMESFTKI EKIDFSCERC KTQGTFEKQL LIDHSPNVVV LHLKRFKYNG
301: LVVQKVEKHV SFSLELDMLL YSNDINNEQI EYDLYAVIVH SGPSISSGHY YNFTRCAPNE WYKFDDEKVY YVQEDLVLAE EAYILFYTKR GTAWFSDYIQ
401: SHRPFLCLVN PTTTNDSNEP TLMPEVNNVE DNDSHDQVYC EDQLQDVKIK KDEKLKDALN CGSHGTSVNE MKRKLKD

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.