Factsheet for Solyc08g023360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g021790.1.1	Tomato	extracellular, vacuole	73.62	79.91
Solyc08g021830.1.1	Tomato	cytosol	68.9	50.0
Solyc09g015580.1.1	Tomato	vacuole	46.85	38.26
Solyc09g015600.1.1	Tomato	extracellular	45.67	37.18
Solyc09g017980.1.1	Tomato	extracellular	24.41	29.95
Solyc08g048310.1.1	Tomato	extracellular, vacuole	25.2	29.63
Solyc08g005080.1.1	Tomato	cytosol	52.76	27.63
Solyc10g047480.1.1	Tomato	nucleus	51.57	27.29
Solyc09g017990.1.1	Tomato	plastid	49.61	26.42
Solyc02g005600.1.1	Tomato	vacuole	48.82	25.41
Solyc08g048410.1.1	Tomato	cytosol	15.75	23.95
Solyc09g015610.1.1	Tomato	cytosol	11.42	23.02
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	22.05	15.91
Solyc08g076910.2.1	Tomato	nucleus	43.7	15.55
VIT_02s0012g01340.t01	Wine grape	nucleus	30.71	14.86
KRH74417	Soybean	nucleus	36.61	12.86
KRH39541	Soybean	nucleus	37.4	12.86
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	28.74	12.46
AT4G17895.1	Thale cress	nucleus	33.07	12.09
CDX76553	Canola	cytosol	30.32	11.99
Bra021031.1-P	Field mustard	nucleus	30.32	11.99
CDX87681	Canola	nucleus	29.53	11.9
CDY37145	Canola	cytosol	30.32	11.56
Bra022060.1-P	Field mustard	nucleus	29.92	11.43
Zm00001d051513_P001	Maize	nucleus	26.38	11.34
Solyc01g105240.2.1	Tomato	nucleus	15.35	10.66
Solyc04g056290.2.1	Tomato	nucleus	14.96	10.3
Solyc07g007640.1.1	Tomato	cytosol	9.45	10.13
CDY58499	Canola	endoplasmic reticulum	28.74	10.12
Bra025000.1-P	Field mustard	endoplasmic reticulum	28.74	10.01
AT5G46740.1	Thale cress	nucleus, plastid	28.35	9.84
Solyc08g068810.2.1	Tomato	cytosol	21.26	9.84
CDX77686	Canola	endoplasmic reticulum	28.74	9.67
OQU85579	Sorghum	nucleus	25.59	8.72
TraesCS6A01G264800.1	Wheat	nucleus	25.2	8.72
TraesCS6B01G291800.1	Wheat	nucleus	25.2	8.66
TraesCS6D01G250100.1	Wheat	nucleus	25.2	8.66
Zm00001d017686_P002	Maize	mitochondrion, nucleus	25.2	8.65
Solyc12g096430.1.1	Tomato	nucleus, plastid	20.87	8.52
HORVU6Hr1G067180.4	Barley	nucleus	24.41	8.39
Solyc01g068240.2.1	Tomato	cytosol	16.14	7.69
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	20.08	7.43
Solyc11g065210.1.1	Tomato	cytosol	15.35	7.3
Solyc08g069050.2.1	Tomato	extracellular	21.26	6.95
Solyc07g005530.2.1	Tomato	nucleus	24.02	6.61
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	20.08	5.28
Solyc04g076210.2.1	Tomato	nucleus	21.65	5.0

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4CJQ4	PFAM:PF00443	ScanProsite:PS00972
PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
EnsemblPlantsGene:Solyc08g023360.1	EnsemblPlants:Solyc08g023360.1.1	UniParc:UPI000276BC73	InterPro:USP_CS	InterPro:USP_dom	:

Description

No Description!

Coordinates

chr8:+:28462472..28465406

Molecular Weight (calculated)

29210.3 Da

IEP (calculated)

5.366

GRAVY (calculated)

0.007

Length

254 amino acids

Sequence
(BLAST)

001: MVGIGMCNLG NTCFLNAVVQ SFMKTIVLLK LLGSIDHISR CDICMIRDLF DLCMSCAFDN ISPRNCYSLE SWYQQEDAHE FLQCFLNKIE NCCYNFELKI
101: CGGGLRCKTH GPFEKQLLVD RAPFVAALDF EIFKNNGLVD IKVDKHVLFS LELDMLLYTS KINNVVFVEE DFVLAKEAYI IFYAKRGTPW FFNYIQIHRS
201: FIKLVVPTSL CIPNNRAFDV GESNNGDEEA SMKYEHNKIE DSDSRGRENK VSMF

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.