Factsheet for Bra025000.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58499	Canola	endoplasmic reticulum	94.92	95.98
Bra022060.1-P	Field mustard	nucleus	62.55	68.57
AT5G46740.1	Thale cress	nucleus, plastid	53.91	53.69
Bra021031.1-P	Field mustard	nucleus	37.59	42.68
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	20.44	42.33
Solyc09g015580.1.1	Tomato	vacuole	17.01	39.87
Solyc09g015600.1.1	Tomato	extracellular	16.74	39.1
PGSC0003DMT400093121	Potato	cytosol	15.23	38.41
Solyc08g048410.1.1	Tomato	cytosol	8.37	36.53
VIT_02s0012g01340.t01	Wine grape	nucleus	26.06	36.19
Solyc09g017980.1.1	Tomato	extracellular	10.01	35.27
Solyc08g048310.1.1	Tomato	extracellular, vacuole	10.15	34.26
Solyc08g005080.1.1	Tomato	cytosol	21.95	32.99
Solyc09g015610.1.1	Tomato	cytosol	5.62	32.54
Solyc09g017990.1.1	Tomato	plastid	21.26	32.49
Solyc08g021830.1.1	Tomato	cytosol	15.5	32.29
Solyc08g021790.1.1	Tomato	extracellular, vacuole	10.15	31.62
Solyc02g005600.1.1	Tomato	vacuole	20.99	31.35
Solyc10g047480.1.1	Tomato	nucleus	20.16	30.62
PGSC0003DMT400045160	Potato	nucleus	29.63	30.34
Solyc08g076910.2.1	Tomato	nucleus	29.63	30.25
PGSC0003DMT400046008	Potato	cytosol	21.95	30.13
PGSC0003DMT400089939	Potato	cytosol	15.23	29.68
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	23.73	29.52
PGSC0003DMT400093591	Potato	cytosol	10.15	29.48
KRH39541	Soybean	nucleus	29.22	28.82
Solyc08g023360.1.1	Tomato	extracellular	10.01	28.74
KRH74417	Soybean	nucleus	28.4	28.63
Zm00001d051513_P001	Maize	nucleus	23.18	28.6
Bra038533.1-P	Field mustard	nucleus	13.85	28.45
Bra010647.1-P	Field mustard	nucleus	13.72	26.88
PGSC0003DMT400088084	Potato	cytosol	11.25	24.4
Zm00001d017686_P002	Maize	mitochondrion, nucleus	24.14	23.78
TraesCS6A01G264800.1	Wheat	nucleus	23.87	23.71
TraesCS6D01G250100.1	Wheat	nucleus	23.87	23.55
HORVU6Hr1G067180.4	Barley	nucleus	23.73	23.41
TraesCS6B01G291800.1	Wheat	nucleus	23.73	23.41
OQU85579	Sorghum	nucleus	23.87	23.36
Bra024037.1-P	Field mustard	cytosol	12.62	23.0
Bra011823.1-P	Field mustard	nucleus	13.85	22.9
Bra011290.1-P	Field mustard	vacuole	17.7	21.08
Bra028566.1-P	Field mustard	cytosol	13.44	19.44
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	15.91	18.38
Bra007837.1-P	Field mustard	nucleus	12.76	18.24
Bra006790.1-P	Field mustard	nucleus, plastid	19.62	17.21
Bra020400.1-P	Field mustard	nucleus	19.48	17.05
Bra027341.1-P	Field mustard	mitochondrion	15.78	16.74
Bra010268.1-P	Field mustard	cytosol	12.89	16.52
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	13.17	16.27
Bra002683.1-P	Field mustard	nucleus	20.71	15.38
Bra024386.1-P	Field mustard	golgi	15.09	14.34
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	16.05	13.12
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	15.64	13.0
Bra013814.1-P	Field mustard	golgi	17.56	12.55
Bra019219.1-P	Field mustard	golgi	17.28	12.45

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	EnsemblPlantsGene:Bra025000	EnsemblPlants:Bra025000.1	EnsemblPlants:Bra025000.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M4E894	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI000253FB6F	InterPro:USP_CS	InterPro:USP_dom	SEG:seg

Description

AT5G46740 (E=2e-189) UBP21 | UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA06:+:24615453..24618873

Molecular Weight (calculated)

83157.7 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.553

Length

729 amino acids

Sequence
(BLAST)

001: MNFPLNSKPF LIDSPCLLLA AIFLLSFLYL TKLRTFFLRI FDLGFLLMAE PSPIIETLDE SPSDDECQTM PDSSSNEIGS RNRPPRRCMR YFDYSSDDDD
101: DLSNGIFRNR SAVYGDLYNR RPRRYMQSFD YSSDDDVEME LPKPIDIFSC SSPENKPTGV GAGLNNSGNT CFIASVLQCL THTVPLLHSL RSYKYHCPCN
201: CGNESFCVLR TLRYHIEHAL RSSGCDIMID RFRDNLNYFS SDFQINHQED AHEFLQSFLD KLEKCCLDRS HRDNPPSVSS QDVNIVDHVF GGRLVSKLRC
301: CNCNSVSETF ETSPGWSLEI EDVEDLSSAL ESFTCVEKLE DQFTCDDCKE KVSKEKQLKF DKLPLVATFH LKRFKNNGVY MQKINKNVKF PLELDLLPYM
401: SSNENPEVST KYHLYAMMEH LGSGTYFGHY SAYVRSAPET WHHFDDEKVR RISEECVLSK SAYMLFYARE GTPCFASAFE ELKTLFDATP MNFSPKSVLE
501: TTTITCSEEC VSDLSYQTVS DSSNACNGSV GVSIPCGNSS DYHCDEAQDE VFHSAESNSG DEYFAFESTK ADDSEKPFAA TFHQEERPLY PDGNRATTDD
601: AYVPVLKIQE QVSSPKREAA ERAIIGEETF LTKRKMQKRN PFSKRQGKTF QIRREHLQNK KKREETCITN PFRSIVAAAS DPKEKKHAVS YLRSRPCSSR
701: SRLLVAALGV NVKKKKVSNI RRSSLHRNL

Best Arabidopsis Sequence Match ( AT5G46740.1 )
(BLAST)

001: MAEFSDPPPS NLSSSHKLTK PNQTLDESSP TAPIRDLVTN SLSLSSPIRQ IQALSPAKPD GSSSSPPDKT LNFNPEENRD VNPDESSSSP SDKTLIAPPA
101: QISPVSNNNH LRITNTSDSY LYRPPRRYIE YESDDDELNK MEPTKPLQLS WWYPRIEPTG VGAGLYNSGN TCFIASVLQC FTHTVPLIDS LRSFMYGNPC
201: NCGNEKFCVM QALRDHIELA LRSSGYGINI DRFRDNLTYF SSDFMINHQE DAHEFLQSFL DKLERCCLDP KNQLGSVSSQ DLNIVDNVFG GGLMSTLCCC
301: NCNSVSNTFE PSLGWSLEIE DVNTLWKALE SFTCVEKLED QLTCDNCKEK VTKEKQLRFD KLPPVATFHL KRFTNDGVTM EKIFDHIEFP LELDLSPFMS
401: SNHDPEVSTR YHLYAFVEHI GIRATFGHYS SYVRSAPETW HNFDDSKVTR ISEERVLSRP AYILFYAREG TPWFSSTFEQ LKTVFEATPL HFSPVSVLDN
501: SYESVDNSSK ACNDSVGVSI PDVKWPDSCC QEPKEEVFHS AESSNNEDSS AMIDALGSPQ SEKPFAETSQ QTEPESCPTE NKAYIDKSEK PFAETSQPKE
601: PKPFADRASI DAPLLKVQNQ DISPKRKAGE RATLGGPKLK YQKPNSHQKR QGTFQIQRAH LQTKKQEESR KTKRPLFRSN VAASAPDPKY KNHALSYLNR
701: AQTPRARKLA NALSDSPTKK KKSSNMRRSI KL

Arabidopsis Description

UBP21Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.