Factsheet for PGSC0003DMT400045160

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076910.2.1	Tomato	nucleus	93.96	93.7
PGSC0003DMT400093121	Potato	cytosol	21.21	52.25
VIT_02s0012g01340.t01	Wine grape	nucleus	36.52	49.52
PGSC0003DMT400046008	Potato	cytosol	34.97	46.89
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	22.05	44.6
PGSC0003DMT400089939	Potato	cytosol	23.31	44.38
PGSC0003DMT400093591	Potato	cytosol	14.19	40.24
PGSC0003DMT400096420	Potato	mitochondrion	7.87	37.58
KRH39541	Soybean	nucleus	37.36	35.99
KRH74417	Soybean	nucleus	35.39	34.85
Zm00001d051513_P001	Maize	nucleus	27.95	33.67
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	27.53	33.45
PGSC0003DMT400088084	Potato	cytosol	15.73	33.33
CDX87681	Canola	nucleus	28.79	32.54
CDX76553	Canola	cytosol	28.93	32.09
Bra021031.1-P	Field mustard	nucleus	28.93	32.09
CDY37145	Canola	cytosol	29.78	31.83
Bra022060.1-P	Field mustard	nucleus	29.63	31.73
AT4G17895.1	Thale cress	nucleus	29.63	30.36
CDY58499	Canola	endoplasmic reticulum	30.06	29.68
Bra025000.1-P	Field mustard	endoplasmic reticulum	30.34	29.63
AT5G46740.1	Thale cress	nucleus, plastid	30.2	29.37
HORVU6Hr1G067180.4	Barley	nucleus	28.93	27.88
CDX77686	Canola	endoplasmic reticulum	29.49	27.81
TraesCS6A01G264800.1	Wheat	nucleus	28.51	27.66
OQU85579	Sorghum	nucleus	28.79	27.52
TraesCS6D01G250100.1	Wheat	nucleus	28.51	27.47
TraesCS6B01G291800.1	Wheat	nucleus	28.51	27.47
Zm00001d017686_P002	Maize	mitochondrion, nucleus	28.09	27.03
PGSC0003DMT400032703	Potato	nucleus	13.48	26.23
PGSC0003DMT400086994	Potato	cytosol	4.35	23.31
PGSC0003DMT400038315	Potato	nucleus	14.19	22.54
PGSC0003DMT400071055	Potato	mitochondrion	18.4	21.2
PGSC0003DMT400033175	Potato	mitochondrion	4.92	20.96
PGSC0003DMT400033182	Potato	cytosol	3.51	17.73
PGSC0003DMT400033184	Potato	cytosol	4.35	16.94
PGSC0003DMT400034298	Potato	cytosol	12.5	16.67
PGSC0003DMT400028924	Potato	nucleus	21.35	16.41
PGSC0003DMT400076065	Potato	endoplasmic reticulum	8.01	16.38
PGSC0003DMT400033173	Potato	mitochondrion	6.88	13.8
PGSC0003DMT400063184	Potato	plastid	1.4	4.48

Protein Annotations

EntrezGene:102598296	Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1BH68	PFAM:PF00443
EnsemblPlantsGene:PGSC0003DMG400017516	PGSC:PGSC0003DMG400017516	EnsemblPlants:PGSC0003DMT400045160	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000296010B
InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_006352858.1	SEG:seg	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400017516]

Coordinates

chr8:-:49579901..49584254

Molecular Weight (calculated)

79684.0 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.596

Length

712 amino acids

Sequence
(BLAST)

001: METLCSETLE TGSKPVDFVS SDETLDRSSS ISADRNLPNT ENSAGLNESE ELCMEEEELD ASPVRTYSAP YYCSRWGQPW GKITDSRPLD SQPTDAEPED
101: EPSPFDWTDG SSENKVETEK LATVESQWNS YRDEEAKFMQ GAGLANLGNT CFLNAVLQSF MHTVPLIQGL QSIDHATPCT SYLKGFCVIC ALRKLIDASL
201: FSEAGVVSPW KFVNNLNYFS STFHRFQQED AHEFLQCFLD KLERCCDDSR PKDCQTLETD NIVKQAFGGR LVSKLRCCNC GHCSDTYETL IDLSLEIEDV
301: DSVDTALESF TKVEKIEDSE TKFTCEKCKE QVSIEKQLVL DKAPSVAALH LKRFKTDGSL VEKIDKYVSF PLELDLHAYA DNQTDNEEMK YDLYAVIVHI
401: GFSYCSGHYY SFIRSAPNEW YKFDDSKVVR VREDYVLSQE AYVLFYAKRG TPWFSDFIEG QKPFIDPSIR STSPKSVLEN TDAVCVPSPL LPNAQAFCVK
501: ESNDAANESS PSSLNKVHDS DGKENVQMMS TPRPPLGASN ILDSKSREVD KVSSPSVLKD LSKSVSSVSV LKENCSTLTP GSTSRTLYIT PDTPPRSPSP
601: EIYREDPPDN DYHIPHGHLR TVGQVSCKKQ LQKDLEQDME RKQACSLIKK NMPGSRAQQL LAAMQGSRSE GSANKRRRGM EVSPTRDDSN PTSRRRSSIG
701: STMRPVMAGS MR

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.