Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g048410.1.1 | Tomato | cytosol | 12.95 | 40.72 |
| PGSC0003DMT400093121 | Potato | cytosol | 21.71 | 39.45 |
| GSMUA_Achr4P19070_001 | Banana | cytosol, golgi, mitochondrion, plastid | 25.71 | 38.35 |
| Solyc09g017980.1.1 | Tomato | extracellular | 15.05 | 38.16 |
| Solyc09g015600.1.1 | Tomato | extracellular | 22.29 | 37.5 |
| Solyc08g048310.1.1 | Tomato | extracellular, vacuole | 15.05 | 36.57 |
| PGSC0003DMT400045160 | Potato | nucleus | 49.52 | 36.52 |
| Solyc09g015580.1.1 | Tomato | vacuole | 21.52 | 36.33 |
| Solyc08g076910.2.1 | Tomato | nucleus | 49.33 | 36.27 |
| PGSC0003DMT400093591 | Potato | cytosol | 16.38 | 34.26 |
| Solyc09g015610.1.1 | Tomato | cytosol | 8.19 | 34.13 |
| KRH74417 | Soybean | nucleus | 44.38 | 32.23 |
| KRH39541 | Soybean | nucleus | 45.14 | 32.07 |
| Solyc08g021830.1.1 | Tomato | cytosol | 21.33 | 32.0 |
| PGSC0003DMT400046008 | Potato | cytosol | 32.0 | 31.64 |
| Solyc08g023360.1.1 | Tomato | extracellular | 14.86 | 30.71 |
| Solyc10g047480.1.1 | Tomato | nucleus | 28.0 | 30.62 |
| Solyc08g005080.1.1 | Tomato | cytosol | 28.19 | 30.52 |
| Solyc08g021790.1.1 | Tomato | extracellular, vacuole | 13.52 | 30.34 |
| Zm00001d051513_P001 | Maize | nucleus | 33.33 | 29.61 |
| CDX87681 | Canola | nucleus | 35.24 | 29.37 |
| GSMUA_Achr5P13990_001 | Banana | endoplasmic reticulum | 32.0 | 28.67 |
| Solyc09g017990.1.1 | Tomato | plastid | 25.9 | 28.51 |
| Bra022060.1-P | Field mustard | nucleus | 35.62 | 28.12 |
| CDY37145 | Canola | cytosol | 35.62 | 28.08 |
| Solyc02g005600.1.1 | Tomato | vacuole | 25.71 | 27.66 |
| CDX76553 | Canola | cytosol | 33.33 | 27.26 |
| Bra021031.1-P | Field mustard | nucleus | 33.33 | 27.26 |
| AT4G17895.1 | Thale cress | nucleus | 35.43 | 26.76 |
| Bra025000.1-P | Field mustard | endoplasmic reticulum | 36.19 | 26.06 |
| AT5G46740.1 | Thale cress | nucleus, plastid | 35.81 | 25.68 |
| PGSC0003DMT400089939 | Potato | cytosol | 18.29 | 25.67 |
| CDY58499 | Canola | endoplasmic reticulum | 35.24 | 25.66 |
| PGSC0003DMT400088084 | Potato | cytosol | 16.19 | 25.3 |
| CDX77686 | Canola | endoplasmic reticulum | 35.43 | 24.64 |
| TraesCS6A01G264800.1 | Wheat | nucleus | 34.1 | 24.39 |
| HORVU6Hr1G067180.4 | Barley | nucleus | 34.29 | 24.36 |
| TraesCS6B01G291800.1 | Wheat | nucleus | 34.1 | 24.22 |
| TraesCS6D01G250100.1 | Wheat | nucleus | 34.1 | 24.22 |
| VIT_11s0118g00280.t01 | Wine grape | mitochondrion | 12.57 | 23.32 |
| Zm00001d017686_P002 | Maize | mitochondrion, nucleus | 32.76 | 23.24 |
| OQU85579 | Sorghum | nucleus | 32.95 | 23.22 |
| VIT_09s0070g00500.t01 | Wine grape | golgi, mitochondrion, nucleus, peroxisome | 15.05 | 22.07 |
| VIT_07s0141g00230.t01 | Wine grape | nucleus | 15.43 | 21.95 |
| VIT_19s0093g00560.t01 | Wine grape | mitochondrion | 19.43 | 16.06 |
| VIT_04s0008g06860.t01 | Wine grape | nucleus | 15.43 | 14.65 |
| VIT_13s0019g01690.t01 | Wine grape | cytosol | 14.86 | 14.1 |
| VIT_19s0014g00210.t01 | Wine grape | nucleus | 23.05 | 13.53 |
| VIT_00s0174g00260.t01 | Wine grape | nucleus | 24.0 | 12.64 |
| VIT_00s0407g00030.t01 | Wine grape | golgi, vacuole | 17.71 | 12.57 |
| VIT_04s0069g00760.t01 | Wine grape | nucleus | 19.62 | 11.92 |
| VIT_00s0199g00030.t01 | Wine grape | vacuole | 19.43 | 11.3 |
| VIT_19s0140g00200.t01 | Wine grape | plasma membrane | 20.0 | 10.53 |
| VIT_18s0001g07370.t01 | Wine grape | golgi, vacuole | 20.57 | 8.82 |
| VIT_11s0118g00290.t01 | Wine grape | nucleus | 3.81 | 5.68 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:35.1 | ProteinID:CCB57899 | ProteinID:CCB57899.1 | UniProt:F6HT89 | EMBL:FN596247 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 |
| InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00973 | PFscan:PS50235 | PANTHER:PTHR44033 | PANTHER:PTHR44033:SF1 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | UniParc:UPI0002109E6E | InterPro:USP_CS | InterPro:USP_dom |
| ArrayExpress:VIT_02s0012g01340 | EnsemblPlantsGene:VIT_02s0012g01340 | EnsemblPlants:VIT_02s0012g01340.t01 | : | : | : |
Description
No Description!
Coordinates
chr2:+:7484356..7487802
Molecular Weight (calculated)
58951.4 Da
IEP (calculated)
5.890
GRAVY (calculated)
-0.593
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCHSFYEGF CVLCTLRDHI ELSLASSGRA IMPLKLVDNL NNISSSLQRY QQEDAHEFLQ CLLDRLDSFY LMNQDKGSHS PDDNLVKHVF GGYLISKLRC
101: CNCGHISDTY EPLIDLSLEI EDVDTLPCAL ESFTKVEKIE DPEMKFTCDN CKEEVSVEKQ LLLDQVPLVA AFHLKRFKTD GTYVEKIDKH VEFPLELDLL
201: PYTKEREDDN VELKYELYAI VEHTGFSSTS GHYFSYIRSS PDTWHRLDDS KVTSVPEDYV LHQEAYILFY ARQGTPWFSS LMQTQKPCLD PNTSGNSPKS
301: VLDNVDSIST SLPTLANVYS HEASETVDAA DEISTCLSGG GRGDVVQVHE DGDVPHRVDT PMPLGVTSCF DGTLDHTQNI STTSPCRDHD GNQHINENCK
401: SKIHPQTPPR SPSPDIYAEE PPEVSYNIPR GHLRQKNQVA CKKPLNKALE DSRKREACKL CKNMPASRSM RLMAAMKGSQ SEGSLGKKKS KRRMESSANG
501: ESNTRARRKS NPCPVMPTVA AGNFR
101: CNCGHISDTY EPLIDLSLEI EDVDTLPCAL ESFTKVEKIE DPEMKFTCDN CKEEVSVEKQ LLLDQVPLVA AFHLKRFKTD GTYVEKIDKH VEFPLELDLL
201: PYTKEREDDN VELKYELYAI VEHTGFSSTS GHYFSYIRSS PDTWHRLDDS KVTSVPEDYV LHQEAYILFY ARQGTPWFSS LMQTQKPCLD PNTSGNSPKS
301: VLDNVDSIST SLPTLANVYS HEASETVDAA DEISTCLSGG GRGDVVQVHE DGDVPHRVDT PMPLGVTSCF DGTLDHTQNI STTSPCRDHD GNQHINENCK
401: SKIHPQTPPR SPSPDIYAEE PPEVSYNIPR GHLRQKNQVA CKKPLNKALE DSRKREACKL CKNMPASRSM RLMAAMKGSQ SEGSLGKKKS KRRMESSANG
501: ESNTRARRKS NPCPVMPTVA AGNFR
001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
Arabidopsis Description
UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.