Factsheet for VIT_19s0014g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0174g00260.t01	Wine grape	nucleus	92.06	82.55
KRH72298	Soybean	cytosol, plastid	36.02	63.39
GSMUA_Achr3P04660_001	Banana	nucleus	35.68	53.17
KRH03060	Soybean	nucleus	47.76	47.29
Solyc07g005530.2.1	Tomato	nucleus	47.2	45.72
PGSC0003DMT400028924	Potato	nucleus	46.76	45.14
CDY11838	Canola	nucleus, plastid	39.71	43.35
CDX88651	Canola	nucleus, plastid	39.93	43.33
Bra006790.1-P	Field mustard	nucleus, plastid	39.93	42.96
CDY02782	Canola	nucleus	36.91	41.2
CDY32735	Canola	nucleus	36.69	40.95
CDY55010	Canola	nucleus	38.59	40.59
AT5G57990.1	Thale cress	nucleus	38.93	40.51
CDY57464	Canola	nucleus	38.37	40.45
Bra020400.1-P	Field mustard	nucleus	37.14	39.86
GSMUA_Achr4P01920_001	Banana	nucleus	41.95	38.82
Os06t0184300-01	Rice	mitochondrion	38.7	37.45
HORVU7Hr1G030300.1	Barley	nucleus	37.92	36.45
Bra002683.1-P	Field mustard	nucleus	39.6	36.05
TraesCS7B01G051400.2	Wheat	nucleus	37.81	36.0
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	34.12	35.92
TraesCS7D01G149800.1	Wheat	nucleus	37.58	35.86
EER89337	Sorghum	nucleus	36.58	35.66
TraesCS7A01G147900.1	Wheat	nucleus	36.58	35.5
Zm00001d045104_P005	Maize	nucleus	35.57	35.22
TraesCS6D01G339500.1	Wheat	nucleus	36.02	31.17
TraesCS6B01G389500.1	Wheat	nucleus	36.35	30.4
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	36.13	30.16
Os02t0795000-01	Rice	nucleus	37.47	28.27
VIT_07s0141g00230.t01	Wine grape	nucleus	11.19	27.1
VIT_11s0118g00280.t01	Wine grape	mitochondrion	7.83	24.73
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	9.73	24.3
VIT_02s0012g01340.t01	Wine grape	nucleus	13.53	23.05
VIT_19s0093g00560.t01	Wine grape	mitochondrion	16.11	22.68
VIT_04s0008g06860.t01	Wine grape	nucleus	11.97	19.35
VIT_13s0019g01690.t01	Wine grape	cytosol	11.97	19.35
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	15.66	18.92
VIT_04s0069g00760.t01	Wine grape	nucleus	17.34	17.94
VIT_00s0199g00030.t01	Wine grape	vacuole	17.56	17.39
VIT_19s0140g00200.t01	Wine grape	plasma membrane	17.45	15.65
VIT_11s0118g00290.t01	Wine grape	nucleus	5.37	13.64
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	18.57	13.55

Protein Annotations

EntrezGene:100246880	wikigene:100246880	MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	MEROPS:C19.A12	ProteinID:CCB46189
ProteinID:CCB46189.1	ncoils:Coil	UniProt:F6H2K2	EMBL:FN595229	GO:GO:0000166	GO:GO:0002943
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006464	GO:GO:0006511
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0017150	GO:GO:0019538	GO:GO:0036459	GO:GO:0050660	GO:GO:0055114
InterPro:IPR028889	EntrezGene:LOC100246880	wikigene:LOC100246880	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
UniParc:UPI00021089C4	InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_19s0014g00210	EnsemblPlantsGene:VIT_19s0014g00210	EnsemblPlants:VIT_19s0014g00210.t01
RefSeq:XP_002283705	RefSeq:XP_002283705.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:202038..211104

Molecular Weight (calculated)

98155.0 Da

IEP (calculated)

9.711

GRAVY (calculated)

-0.571

Length

894 amino acids

Sequence
(BLAST)

001: MAEALISNPE ANTQENGPYS ASPDPSSTGS FFHRRIEFHL ARKPFSGFTN GGGGFRLETL NPTTDPKRPG HSTGPAASSG KKQDGSDHVE NGLDPELSIG
101: ITFRRIGAGL ENLGNTCYLN SVLQCLTYTE PLAAYLQSGK HQNSCRIAGF CALCAIQKHV SRALQSTGRI LVPKDLVSNL RCISRNFRNA RQEDAHEYMV
201: HLLETMHKCC LPSGVPSESP SAYEKSLVHK IFGGLLRSQV KCMQCSYCSN KFDPFLDLSL EIFKADSLHK ALVHFTATEQ LDGGERQYQC QRCKQKVKAL
301: KQLTVHKAPY VLTIHLKRFG AHDPGQKIDK KVHFGPTMDL KPFVSGSYEE NLKYTLYGVL VHAGWSTHSG HYYCFVRTST GMWYSLDDNR VVQVSERTVL
401: DQKAYMLFYV RDRKNFTPKK SIDVVQKQNL VVSAIAKKTC SSISQGIKET IQNRPVEKSL SGAIASAAVT TNDVSNVGLS KEILSKEASA PKSSRFSSEC
501: LALKNGPMSE PPPNVALSKQ RVKEPSVLNP TLEKSMPPSA PSVKGSGITN LDNAVAASTG AKFNVRSEDE ISKKDQGILD VIQANCLGSH NSAADKPDSE
601: KTSPKVGIIS NANGTLEKIE PVKFPNGPGG ESFQVGSIPK GSAAGDLLIE NVDDGGQKLS TKSVEFSSPP SMMNGSIHMK TLDCKPHRKL KKKHMKRSMH
701: LVSNNLFRAS LSLRKKKKQR RSKRHTSDIK NLTQERLLEA GCLSIDQGPS TSDKTQTISV GPTNPQGKRV KHGTKKGDKR TAGKDVKTSN SECLMDTMDM
801: EIRDRIGQEG AMLATDKEPQ KSSSSVAKQW DAQGSDSLND SKRDRMQNGL MSMLTRGLDK TIVARWDEIE WPSNRVMESR SVEGVTIGYV PDEW

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.