Factsheet for GSMUA_Achr6P01970_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04660_001	Banana	nucleus	31.8	45.0
KRH72298	Soybean	cytosol, plastid	25.44	42.52
GSMUA_Achr4P01920_001	Banana	nucleus	39.69	34.89
VIT_19s0014g00210.t01	Wine grape	nucleus	35.92	34.12
CDY02782	Canola	nucleus	30.98	32.83
Os06t0184300-01	Rice	mitochondrion	35.45	32.58
VIT_00s0174g00260.t01	Wine grape	nucleus	38.16	32.5
CDY11838	Canola	nucleus, plastid	30.74	31.87
HORVU7Hr1G030300.1	Barley	nucleus	34.75	31.72
TraesCS7A01G147900.1	Wheat	nucleus	34.28	31.6
TraesCS7B01G051400.2	Wheat	nucleus	34.75	31.42
TraesCS7D01G149800.1	Wheat	nucleus	34.63	31.38
CDY32735	Canola	nucleus	29.56	31.34
CDX88651	Canola	nucleus, plastid	30.27	31.19
Solyc07g005530.2.1	Tomato	nucleus	33.69	30.99
Bra006790.1-P	Field mustard	nucleus, plastid	30.27	30.93
KRH03060	Soybean	nucleus	32.86	30.9
EER89337	Sorghum	nucleus	33.33	30.86
AT5G57990.1	Thale cress	nucleus	31.21	30.85
Bra020400.1-P	Field mustard	nucleus	30.04	30.61
PGSC0003DMT400028924	Potato	nucleus	33.33	30.56
CDY57464	Canola	nucleus	30.51	30.54
CDY55010	Canola	nucleus	30.04	30.0
Zm00001d045104_P005	Maize	nucleus	31.68	29.79
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	11.78	28.41
TraesCS6D01G339500.1	Wheat	nucleus	33.57	27.59
Bra002683.1-P	Field mustard	nucleus	31.57	27.29
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	34.04	26.98
TraesCS6B01G389500.1	Wheat	nucleus	33.92	26.94
Os02t0795000-01	Rice	nucleus	35.92	25.74
GSMUA_Achr7P19160_001	Banana	mitochondrion	8.95	24.92
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	16.37	23.72
GSMUA_Achr7P05330_001	Banana	cytosol	8.6	22.88
GSMUA_Achr1P11380_001	Banana	cytosol	10.01	22.79
GSMUA_Achr10P...	Banana	cytosol	9.07	22.32
GSMUA_Achr7P05090_001	Banana	vacuole	12.25	22.27
GSMUA_Achr7P19010_001	Banana	nucleus	11.43	21.09
GSMUA_Achr10P...	Banana	nucleus	9.89	20.69
GSMUA_Achr8P14390_001	Banana	cytosol	8.72	20.22
GSMUA_Achr10P...	Banana	nucleus	8.83	20.05
GSMUA_Achr9P10330_001	Banana	mitochondrion	14.49	19.74
GSMUA_Achr8P09770_001	Banana	cytosol	9.89	19.63
GSMUA_Achr7P17050_001	Banana	plastid	8.72	14.18
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	13.07	13.25
GSMUA_Achr5P22990_001	Banana	vacuole	13.31	12.57
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	13.07	11.99
GSMUA_Achr2P20080_001	Banana	plasma membrane	12.96	11.69
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	14.96	11.23
GSMUA_AchrUn_...	Banana	golgi, vacuole	13.31	11.15
GSMUA_Achr7P19170_001	Banana	cytosol	1.18	7.46
GSMUA_Achr10P...	Banana	golgi	3.3	6.22
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	1.77	3.89

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr6G01970_001	EnsemblPlants:GSMUA_Achr6P01970_001	EnsemblPlants:GSMUA_Achr6T01970_001	InterPro:IPR028889
UniProt:M0T3E5	PFAM:PF00443	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000294E19C	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Putative ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G01970_001]

Coordinates

chr6:+:1269900..1274247

Molecular Weight (calculated)

95355.4 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.597

Length

849 amino acids

Sequence
(BLAST)

001: MCAIQNHVMI ALQSTGKILS PSTLVKNLRC ISRNFRNSRQ EDAHEYMVSL LESMHKCCLP SGVPSESPTA YEKSLVHKIF GGRLRSQVKC MQCSYSSNKF
101: DPFLDLSLEI AKVDSLWKAL KHFTAVEQLD GGERQYQCQN CKEKVRALKQ LTIHKAPYVL TIHLKRFDSL FPGQKIDTKV DFDLTLDLKP FISDPHVYDL
201: KYTLYGVLVH AGWSTESGHY YCYVCTSSGM WHSLDDNQVY QVSEKTVLEQ KAYMLFYVRD RSSIVKKSSE MIQKDCVSTN PPGKKLIPHS ALVIKGAVLN
301: CLVDGKLSTL ESSSAILKSY PITDCHPDSG IGSSSDSQLP GVAFLRENDN NIQNENVAPQ SDSQLLGRKA ALLRANSDIM SNALQQGKKS ADAASSKEFM
401: MPVSQIIQQR LIEDSIEPAR DKDFVVMVTH ANDATVTSES DQTNSGKCLL SNDWNEEVKS EVLLSVPNNA SCSDSSPQQH HEKILKQINM HENDDVAIAI
501: YQNNDALSQK GTSNVPADKN PLKLLNQLGF MQMASHDKTS VEHQIGNESK RCSTNTQCNG GYLKLEESGM TNVLKGCSSG FVEKEVLDVM KSQTGLKPKK
601: HVKHSLNGIY FGRKQLFLSL LSADKIRKRN RRKKRLSIMT SLQKKAVPDD VSLNDQGTST SEIVKNVVLS ECSGRKNSRA SFKKNRSTCS MRNDSYCNSE
701: SLNISTGGIG GDNGKDRTHD HPEQSRWCSS STDYQCNSRD TILDDNGLLQ HNIMKLLMRG LNKKTVARWY HLESPEFEVH GLKSSRSSRI DYVVDEWNEE
801: YCQGRRKKAK KSKESNGGQN EFQEMTDVKQ QERSKVKKQR LLSIIPFRI

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.