Factsheet for Bra020400.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32735	Canola	nucleus	93.16	96.88
Bra006790.1-P	Field mustard	nucleus, plastid	70.95	71.12
AT5G57990.1	Thale cress	nucleus	64.71	62.75
Bra002683.1-P	Field mustard	nucleus	73.83	62.63
KRH72298	Soybean	cytosol, plastid	31.33	51.38
GSMUA_Achr3P04660_001	Banana	nucleus	32.05	44.5
VIT_19s0014g00210.t01	Wine grape	nucleus	39.86	37.14
KRH03060	Soybean	nucleus	39.74	36.66
VIT_00s0174g00260.t01	Wine grape	nucleus	43.1	36.01
Solyc07g005530.2.1	Tomato	nucleus	39.02	35.21
PGSC0003DMT400028924	Potato	nucleus	38.78	34.88
Os06t0184300-01	Rice	mitochondrion	37.58	33.87
HORVU7Hr1G030300.1	Barley	nucleus	37.7	33.76
TraesCS7A01G147900.1	Wheat	nucleus	37.21	33.66
TraesCS7B01G051400.2	Wheat	nucleus	37.82	33.55
TraesCS7D01G149800.1	Wheat	nucleus	37.58	33.4
EER89337	Sorghum	nucleus	36.49	33.15
GSMUA_Achr4P01920_001	Banana	nucleus	37.09	31.99
Zm00001d045104_P005	Maize	nucleus	34.45	31.78
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	30.61	30.04
TraesCS6D01G339500.1	Wheat	nucleus	34.81	28.07
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	34.81	27.08
TraesCS6B01G389500.1	Wheat	nucleus	34.45	26.85
Bra038533.1-P	Field mustard	nucleus	11.16	26.2
Os02t0795000-01	Rice	nucleus	36.25	25.49
Bra010647.1-P	Field mustard	nucleus	10.92	24.46
Bra024037.1-P	Field mustard	cytosol	10.92	22.75
Bra021031.1-P	Field mustard	nucleus	17.05	22.12
Bra027341.1-P	Field mustard	mitochondrion	17.77	21.54
Bra007837.1-P	Field mustard	nucleus	13.09	21.37
Bra011823.1-P	Field mustard	nucleus	11.28	21.32
Bra022060.1-P	Field mustard	nucleus	16.81	21.05
Bra011290.1-P	Field mustard	vacuole	15.37	20.91
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	15.61	20.6
Bra028566.1-P	Field mustard	cytosol	12.36	20.44
Bra025000.1-P	Field mustard	endoplasmic reticulum	17.05	19.48
Bra010268.1-P	Field mustard	cytosol	11.76	17.22
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	11.76	16.61
Bra024386.1-P	Field mustard	golgi	15.01	16.3
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	15.49	14.46
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	15.01	14.25
Bra019219.1-P	Field mustard	golgi	16.45	13.54
Bra013814.1-P	Field mustard	golgi	15.73	12.84

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra020400	EnsemblPlants:Bra020400.1	EnsemblPlants:Bra020400.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:M4DV57	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002545CFE
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

AT5G57990 (E=3e-266) UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA02:+:6557100..6560398

Molecular Weight (calculated)

92323.1 Da

IEP (calculated)

10.023

GRAVY (calculated)

-0.664

Length

833 amino acids

Sequence
(BLAST)

001: METLNPSSAN KRAFSSPSSK RSDGSDPLEH GLDRELTFNR TIRKIGAGLE NLGNTCFLNS VVQCLTYTEP LAAYLQDVGH GRRCHMAGFC ALCAMQKHVR
101: LALQASGKIV APKYLVSNLR CVSRNFRNCR QEDAHEYMIN LLECMHRCCL PSGVPSESSD AYRSSLVHKI FGGSLRSRVK CAQCSHCSDK FDPFLDLSLD
201: ISKADSLQRA LSRFTAVELL DDGAKIYQCE RCKQKVRAEK QMTVSKAPYV LTVHLKRFEA HRSEKIDKKV QFASAVDMKP FVSGPYAGNL KYTLYGVLVH
301: YGRSSHSGHY ACFVRTSSGM WYSLDDNRVS KVSEKTVFNQ KAYMLFYVRD RQNPAPKNTV TVVKKETPKE SLATNSASLN IFSSRNDQVN SSAAMKTCSL
401: KAPVANGISP LRSCEKGAPA VLTQKDLNAK ETQNDAPSIV EAKEILKREN GTEPLEPCAK GAPAVLAQKD LNKELPSSAE VKEIPKRENG SAPLKPCDLL
501: APSLLTQKDL NTKETLQKEA PLPQANGDVS LVKESSRAAC AILVRKDSPI KEAVDVNQTL GHQLEESATS IKSVKASSDE GTLTTPRKTR KGSMKTLKVG
601: FKSFKLTLGV RKKKKQKKRR PSAVKVDSEV LSSKRATDQE RSTPQITSDV ASSGSGCLHG KDNSVNLHDE KIRSRNGNML LGSPAVELKE RSNQNGAVLA
701: SDQEQTLKRS DMSEASQNAK RKRESAKEEQ NSSQKEQVTI LTRGLPETVV AKRDEEVSAS RKMGKSESTR IGYVADEWDE EYDKGKKKKI RTKEEEMYAV
801: PNPFQLFAPK KQQTDTKKKW TQRMNTAKTG FRI

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.